Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c21f
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 30 0.49
01_03_0108 - 12628711-12629178 29 1.5
02_05_0979 + 33268294-33269595 28 2.0
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 27 3.4
04_03_0314 - 14238620-14240128 27 3.4
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151... 27 4.5
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 4.5
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334... 27 6.0
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 26 7.9
05_01_0438 + 3475017-3475484 26 7.9
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 26 7.9
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 160 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 261
LW EHF L G + PHR + IG DS+ T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>01_03_0108 - 12628711-12629178
Length = 155
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 322 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 191
KHK+V ++++ K+ T LR+ P A CG GTF++ H
Sbjct: 94 KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNAECGAGTFMANH 136
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 218 RWGNLPFLPPSKEKCSDRHNRHRA*C*SISSGCVAALRIRILGHRKMAIYLWQRKTTMIV 39
+W +L PP +E + RH H S C + ++I GH YLW T I+
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPSTRHIL 151
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 178 NVPTATTAIAPSAKALAADVL 116
++PT TTA +P+ KAL D+L
Sbjct: 25 HLPTTTTAASPALKALGEDLL 45
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 193 HQVKRNVPTATTAIAPSAKALAADV 119
H + N+ T A+ P+A+ALAAD+
Sbjct: 145 HPLSPNLSTLAVALTPAAEALAADL 169
>12_02_0037 -
12613686-12614318,12614792-12614878,12614985-12615176,
12617246-12617371,12617479-12617565,12617994-12618458,
12618868-12618947,12619739-12619751
Length = 560
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 279 YFSAALCSATIFADSRLELRAVGEPSFL 196
YF A LC T+ +S + + AV P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 227 SSVRWGNLPFLPPSKEKCSDRHNRHRA 147
S +RW FLPPS + SD H + RA
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRA 524
>06_01_0471 -
3341839-3341881,3341987-3342080,3344724-3344914,
3345025-3345248
Length = 183
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 134 CFSTRRDGGCGG 169
C RRDGGCGG
Sbjct: 87 CLHRRRDGGCGG 98
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 99 NSWSSQNGNLFVATKNDNDCDGTLCTVQIENET 1
N WS N NL + DG++ ++ +N+T
Sbjct: 539 NKWSLSNSNLCITNDMKPSKDGSILELKCDNKT 571
>05_01_0438 + 3475017-3475484
Length = 155
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 322 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 191
KHK+V ++++ K+ T LR+ P CG GTF++ H
Sbjct: 94 KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNNDCGAGTFMANH 136
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 257 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHN 159
L SSP+ + S + G LPFL P KC + N
Sbjct: 108 LYTSSPMNSGSCRKTGYLPFL-PQPPKCEQQQN 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,394,773
Number of Sequences: 37544
Number of extensions: 202821
Number of successful extensions: 558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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