Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c21f
(364 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U54559-1|AAD03465.1| 352|Homo sapiens translation initiation fa... 29 4.5
CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein. 29 4.5
BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation ... 29 4.5
BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein. 29 4.5
BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation ... 29 4.5
AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation ... 29 4.5
AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation ... 29 4.5
U80735-1|AAB91434.1| 744|Homo sapiens CAGF28 protein. 29 5.9
BX538201-1|CAD98066.1| 675|Homo sapiens hypothetical protein pr... 29 5.9
BC033781-1|AAH33781.1| 757|Homo sapiens PAXIP1 protein protein. 29 5.9
BC008328-1|AAH08328.1| 391|Homo sapiens PAXIP1 protein protein. 29 5.9
AK123600-1|BAC85657.1| 1035|Homo sapiens mRNA. protein. 29 5.9
AC093726-1|AAP21865.1| 698|Homo sapiens unknown protein. 29 5.9
>U54559-1|AAD03465.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 231 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 61
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 231 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 61
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 231 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 61
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein.
Length = 349
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 231 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 61
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 283 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 341
>BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 231 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 61
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 231 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 61
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 231 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 61
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>U80735-1|AAB91434.1| 744|Homo sapiens CAGF28 protein.
Length = 744
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 331 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 197
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 635 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 679
>BX538201-1|CAD98066.1| 675|Homo sapiens hypothetical protein
protein.
Length = 675
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 331 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 197
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 566 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 610
>BC033781-1|AAH33781.1| 757|Homo sapiens PAXIP1 protein protein.
Length = 757
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 331 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 197
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 648 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 692
>BC008328-1|AAH08328.1| 391|Homo sapiens PAXIP1 protein protein.
Length = 391
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 331 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 197
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 282 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 326
>AK123600-1|BAC85657.1| 1035|Homo sapiens mRNA. protein.
Length = 1035
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 331 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 197
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 926 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 970
>AC093726-1|AAP21865.1| 698|Homo sapiens unknown protein.
Length = 698
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 331 LDSKHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLS 197
L+ KR HVS + + K F+ C L C GG LS
Sbjct: 589 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 633
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,664,909
Number of Sequences: 237096
Number of extensions: 1008220
Number of successful extensions: 2022
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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