Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c21f
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    30   0.57 
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    30   0.57 
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin (cae...    26   7.0  
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    26   9.3  

>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 302  KYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 150
            KY+F ++I     ++ LLSS  +   S+++GN  +     EK S     HR
Sbjct: 1242 KYHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 302  KYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 150
            KY+F ++I     ++ LLSS  +   S+++GN  +     EK S     HR
Sbjct: 1242 KYHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 161  CGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSAAEK*FCSQNNTYV 307
            CGG   S  +  +K G P+  SS + + K   +  AA+   C + + YV
Sbjct: 1373 CGGGKASAIVAEKKSGKPSTFSS-KPNGKEDGDDEAAD--VCDRGSAYV 1418


>AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 4 protein.
          Length = 66

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 269 LHYVLLLSSPIRALSSVRWGNLPF 198
           L Y+L+L   I A+SS +WG  P+
Sbjct: 2   LRYILVLLVAIIAMSSAQWGYGPY 25


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 90  SSQNGNLFVATKNDNDCDGTLCTVQI 13
           SS NG+  + TKN   C+ T+C + +
Sbjct: 33  SSMNGSFGIITKNHAICNLTMCLLYV 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,801,142
Number of Sequences: 27780
Number of extensions: 167260
Number of successful extensions: 413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)