Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c20r
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   1.1  
SPBC216.06c |swi1||replication fork protection complex subunit S...    24   4.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   6.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   8.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   8.1  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +3

Query: 48  CHCTLXY-LPTENYHASSTKGAILIIAHTYSKRYYAIDSVLACLTFF 185
           C   + Y LP   Y    T     + A   S     I S+LAC TFF
Sbjct: 370 CLSVIRYVLPLREYEIFYTGHLYALFAFKLSHDEAFISSILACFTFF 416


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 212 FGERVDPMEEKRQARENTINSVITF 138
           F E VD +   RQA+ N  NS++++
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSILSY 134


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 185 LPSDLLFLQRAI*TFLRLTNLLETIIFQFYLYCIRE 292
           LPS LL+ ++ +  F  +TNL E  +++  L  +++
Sbjct: 28  LPSTLLYDEKGLRLFDEITNLKEYYLYESELDILKK 63


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 5    CWFFVGTHSWGILIMSLHTXLSAY*KLPCFQY--QGSDSYNCTHXFQTL 145
            C  F+G+ SW     S++T +S    +P  +Y  Q  D +N +  F+TL
Sbjct: 1072 CLEFMGSRSWRDRESSVNTLVSLLSNVPVTEYLNQLEDIWNMS--FRTL 1118


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 239  TNLLETIIFQFYLYCI 286
            TNLL+  +FQ YL C+
Sbjct: 1175 TNLLDLPMFQVYLGCV 1190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,916
Number of Sequences: 5004
Number of extensions: 21952
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)