Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c20r
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    26   7.2  
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870...    26   7.2  
05_07_0097 - 27666456-27666719,27666837-27667022,27667233-276673...    26   7.2  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    26   7.2  
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530...    25   9.5  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     25   9.5  

>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 8   WFFVGTHSWGILIMSLHTXLSAY*KLPCFQYQGSDS 115
           WF++ +H    + +     +++  K+PCF Y   DS
Sbjct: 516 WFYLVSHGAHAIGLRERRWIASKLKMPCFPYDYPDS 551


>08_02_1563 +
           27886202-27886446,27886533-27886618,27886942-27887030,
           27887193-27887432,27887527-27887648,27888103-27888178,
           27888276-27888383,27888465-27888641,27888959-27889176,
           27889313-27889445,27889584-27889807,27890052-27890205,
           27890297-27890380
          Length = 651

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 156 DSVLACLTFFFHRIYSFSKGQSE 224
           D  L C  F  HRIY FS+ + E
Sbjct: 437 DPTLLCCAFKKHRIYLFSRREPE 459


>05_07_0097 -
           27666456-27666719,27666837-27667022,27667233-27667387,
           27667488-27667620,27667718-27667908,27668078-27668513
          Length = 454

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = -1

Query: 231 KNVQIALWRKSRSDGRKTSSTREHYQ 154
           K   +++W++  SDG+K+++  +H++
Sbjct: 305 KIADLSVWQEVVSDGKKSTANNDHHE 330


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 212 FGERVDPMEEKRQARENTINSVITFGIXVCNYKNRSLGTGSMVVFSRQI 66
           F E+   +  +     N +N V+     +CN   RSLG   +   S+ I
Sbjct: 682 FSEKCVDLSNQADILYNRLNRVVKIAPEICNESYRSLGRVLLCNMSKSI 730


>12_02_0726 -
           22552005-22552035,22552507-22552598,22552970-22553094,
           22553221-22553311,22553475-22553755,22554211-22554394,
           22554499-22554583,22554692-22554782,22554909-22555293,
           22555457-22555669,22555873-22556418,22556572-22556788,
           22556907-22557058,22557519-22557663,22557846-22557907,
           22559130-22559291,22559393-22559482,22560055-22560215,
           22560907-22560997,22561125-22561308,22561556-22561737,
           22561857-22562086,22562622-22562685
          Length = 1287

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 78  ENYHASSTKGAILIIAHTYSKRY-YAIDSVLACLTFFFHRIYSFSKGQSEHFC 233
           E  +   TKGA     H++ KR+   +D  +A L FF H  Y  +    E  C
Sbjct: 580 EKRYMELTKGAADNYHHSWWKRHGVVLDGEIAAL-FFKHENYDLAAKSYEKVC 631


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 224 FRLPFGERVDPMEEKRQARENTINSVITFGIXVCNYKNRSLGTGSMVVFS 75
           +++P G R   +   + A +N      T    V ++ N+SL    MVV S
Sbjct: 78  YQVPSGRRDGNVSVAQDAIDNLPQPTFTAAQLVASFANKSLTAEEMVVLS 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,366,807
Number of Sequences: 37544
Number of extensions: 122824
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)