Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c20r
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical ...    30   0.30 
AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical ...    30   0.30 
AC024845-5|AAF60848.1|  719|Caenorhabditis elegans Hypothetical ...    28   1.2  
AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   3.6  

>AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical
           protein ZK250.5a protein.
          Length = 625

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +3

Query: 54  CTLXYLPTENY-HASSTKGAILII-AHTYSKRYYAIDSVLACLTFFFHRIYSFSKGQSEH 227
           C +  +P EN+ H       +L I A        AI S  +CL  F    +   +  +E 
Sbjct: 187 CIVVEIPIENFSHCEDVTIFVLCISADDIRTLVNAIVSNSSCLKHFCFTYHCLHENITEQ 246

Query: 228 FCD*LIC*KQLFFNFIYIAL-ENKWK 302
           F D LIC KQ+  +  ++ L EN+ K
Sbjct: 247 FLDNLICEKQINTDGEHVRLIENEIK 272


>AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical
           protein ZK250.5b protein.
          Length = 832

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +3

Query: 54  CTLXYLPTENY-HASSTKGAILII-AHTYSKRYYAIDSVLACLTFFFHRIYSFSKGQSEH 227
           C +  +P EN+ H       +L I A        AI S  +CL  F    +   +  +E 
Sbjct: 394 CIVVEIPIENFSHCEDVTIFVLCISADDIRTLVNAIVSNSSCLKHFCFTYHCLHENITEQ 453

Query: 228 FCD*LIC*KQLFFNFIYIAL-ENKWK 302
           F D LIC KQ+  +  ++ L EN+ K
Sbjct: 454 FLDNLICEKQINTDGEHVRLIENEIK 479


>AC024845-5|AAF60848.1|  719|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.5 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 45  SCHCTLXYLPTENYHASSTKGAILIIAHTYSKRYY 149
           SC   L  +P  NY+A    G + +  H   K YY
Sbjct: 508 SCQIKLVDVPELNYYAKDQAGEVCVKGHIIFKGYY 542


>AF016416-5|AAB65277.1|  217|Caenorhabditis elegans Hypothetical
           protein F29A7.7 protein.
          Length = 217

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 84  YHASSTKGAILIIAHTYSKRYYAIDSVLACLTFFFHRIYSFS 209
           YH+ ST+G +L +     K Y   D +L  +   +  IY +S
Sbjct: 45  YHSPSTQGILLEVGECVQKCYENEDCILCYMNDGYCMIYHYS 86


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 258 IVSSKLVNRKNVQIALWRKSRSDGRK-TSSTREHYQ*RNNVWNXCVQL*ESLPW 100
           +VS++L N+   Q+ L  K+    R   +S   H +  NN+W  C+   E L W
Sbjct: 633 VVSTELWNK---QVLLTSKNLQAARTFIASITTHIKELNNLWYLCMATCEHLSW 683


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 258 IVSSKLVNRKNVQIALWRKSRSDGRK-TSSTREHYQ*RNNVWNXCVQL*ESLPW 100
           +VS++L N+   Q+ L  K+    R   +S   H +  NN+W  C+   E L W
Sbjct: 633 VVSTELWNK---QVLLTSKNLQAARTFIASITTHIKELNNLWYLCMATCEHLSW 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,848,663
Number of Sequences: 27780
Number of extensions: 123670
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)