Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c20r
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   2.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   2.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   8.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   8.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = -2

Query: 239 LIAKMFRLPFGERVD------PMEEKRQARENTINSVI 144
           LIA +F +PF   VD      P   KR + E+ I +++
Sbjct: 159 LIALIFAMPFATYVDINYVEYPQNSKRNSEESAICAML 196


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 271 KLKNNCF*QIS*SQKCSDCPLEK 203
           K  NNC   +   +KC +C L+K
Sbjct: 224 KYGNNCEIDMYMRRKCQECRLKK 246


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 271 KLKNNCF*QIS*SQKCSDCPLEK 203
           K  NNC   +   +KC +C L+K
Sbjct: 21  KYGNNCEIDMYMRRKCQECRLKK 43


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 228 FCD*LIC*KQLFFNFIYIALENKW 299
           F D L+    + F+ IY  LEN+W
Sbjct: 89  FADCLVGLVVMPFSAIYEVLENRW 112


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 72  PTENYHASSTKGAILI 119
           PT  YH S  K AI +
Sbjct: 259 PTSPYHVSDHKAAITV 274


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 45  SCHCTLXYLPTENYHASS 98
           +C+C++ +LP  N   S+
Sbjct: 683 NCNCSMDWLPGINNQTST 700


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -3

Query: 232 QKCSDCPLEK 203
           Q+C++CP+ K
Sbjct: 260 QECTECPIGK 269


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 288 LMQYR*N*KIIVSSKLVNRKN 226
           L+ +  N  I+  SKLVN++N
Sbjct: 506 LINFSKNNTIVDISKLVNKRN 526


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 14  FVGTHSWGILI 46
           F   H WGIL+
Sbjct: 506 FFSFHQWGILV 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,111
Number of Sequences: 438
Number of extensions: 1540
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)