Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c20f
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   2.2  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   5.0  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   5.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   8.8  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 272 IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAI 159
           I  +  +C++ L  + MF   GSD+Y      + + AI
Sbjct: 706 ITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAI 743


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 129 LPSDLLFLQRAI*TFXRLTNLLETIIFQ 46
           LPS LL+ ++ +  F  +TNL E  +++
Sbjct: 28  LPSTLLYDEKGLRLFDEITNLKEYYLYE 55


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 102 FGERVDPMEEKRQARENTINSVITF---GIMCAIIRI 203
           F E VD +   RQA+ N  NS++++    ++ AI+ +
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSILSYKKGSVLSAILAV 146


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 191 CTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 93
           C    + YYAID+++A   F  +RI   SKG +
Sbjct: 473 CMETMEGYYAIDNLIAKCEFLGNRI---SKGMA 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,080,481
Number of Sequences: 5004
Number of extensions: 16521
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)