Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c20f
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)                27   4.9  
SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)                   27   4.9  
SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57)                  26   8.5  

>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
          Length = 503

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 188 THYSKRYYAIDSVLACLTFFFHRIYSFSKGQSEHXCD 78
           +H+  +  AI  +L C+T    +    SK  + H C+
Sbjct: 194 SHFYHKSLAIKDILLCVTLQLRQFRRASKAHAHHMCE 230


>SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)
          Length = 375

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/38 (23%), Positives = 25/38 (65%)
 Frame = -1

Query: 203 DSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQSE 90
           ++++C  Y+++ +++ S++   TFF+ R+ S  + + E
Sbjct: 6   EAWSCQTYTRQVHSLLSLIKLHTFFYWRVQSKEEEEQE 43


>SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57)
          Length = 497

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -1

Query: 212 QGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQSEHXCD*LIC*KQLFFNFXIY 33
           Q   SY  T Y   ++ +D ++  L FFF+ +  F KG  +   + LI   ++   F ++
Sbjct: 213 QFGPSYKATEYRALFHVLDEIVP-LVFFFYPVV-FRKGNIKEYEEALI---RISIMFIMH 267

Query: 32  C 30
           C
Sbjct: 268 C 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,718,948
Number of Sequences: 59808
Number of extensions: 121629
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)