Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c20f
(371 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 23 0.88
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 23 1.2
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 23 1.2
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 23 1.2
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 20 8.2
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 20 8.2
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 20 8.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 8.2
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 20 8.2
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 20 8.2
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 23.4 bits (48), Expect = 0.88
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 236 LKTTMFQYQGSDSYNCTHYSKRYYAI 159
LKT M + G Y+C+H +++ +
Sbjct: 25 LKTHMRLHTGEKPYHCSHCDRQFVQV 50
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 23.0 bits (47), Expect = 1.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = +3
Query: 75 LIAXMFRLPFGERVD------PMEEKRQARENTINSVI 170
LIA +F +PF VD P KR + E+ I +++
Sbjct: 159 LIALIFAMPFATYVDINYVEYPQNSKRNSEESAICAML 196
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 23.0 bits (47), Expect = 1.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 34 YXIKLKNNCF*QIS*SXKCSDCPLEK 111
Y K NNC + KC +C L+K
Sbjct: 221 YQCKYGNNCEIDMYMRRKCQECRLKK 246
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 23.0 bits (47), Expect = 1.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 34 YXIKLKNNCF*QIS*SXKCSDCPLEK 111
Y K NNC + KC +C L+K
Sbjct: 18 YQCKYGNNCEIDMYMRRKCQECRLKK 43
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 20.2 bits (40), Expect = 8.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Frame = -1
Query: 221 FQYQGSDSYNCTHYSKRYY 165
+ Y +YN +Y+K+ Y
Sbjct: 98 YNYNNKYNYNNNNYNKKLY 116
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.2 bits (40), Expect = 8.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 4 LFISIYSLMQYXIKLKN 54
+FIS+ + + IKLKN
Sbjct: 769 IFISVQAPPHFEIKLKN 785
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 332 NNYNKHNYNKLYYNINYI 349
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 203 DSYNCTHYSKRYYAIDSV 150
++YN +Y+K YY I+ +
Sbjct: 332 NNYNKHNYNKLYYNINYI 349
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,412
Number of Sequences: 438
Number of extensions: 1153
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8928360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -