Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c19r
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   244   4e-65
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   3.7  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    27   6.5  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    27   8.6  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     27   8.6  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     27   8.6  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  244 bits (596), Expect = 4e-65
 Identities = 113/131 (86%), Positives = 123/131 (93%)
 Frame = -2

Query: 512 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 333
           MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60

Query: 332 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 153
            V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61  FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 152 VAKECADLWPR 120
           VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +1

Query: 307 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 483
           +PF+ T     +  P A ++ R P+ P+   T    AP      +  PT  PR I    P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188

Query: 484 AEPPRPLLDILLYQNFE 534
            +P RP+  I   Q F+
Sbjct: 189 QQPFRPIQPIQPQQPFQ 205


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 63  TQLLILNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 194
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = -2

Query: 461 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 294
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 293 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 210
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 DYDTRIVLKVYKYSITPSERFPL 263
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 352 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 444
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 100 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNR 2
           ++LE  F +++      PSTS S+P N N R R
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKR 475


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 462 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 367
           PG P G+ N       G    CD CP  + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 100 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNR 2
           ++LE  F +++      PSTS S+P N N R R
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKR 475


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 471 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 367
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 471 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 367
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 515 KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYV 396
           K  K+G+GG+A A     I +G   + VG +I C  +  A  LYV
Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYV 781


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 471 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 367
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 471 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 367
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,043
Number of Sequences: 27780
Number of extensions: 282486
Number of successful extensions: 823
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)