Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c19f
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 244 4e-65
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 3.7
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 4.9
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 27 6.5
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 27 8.6
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 8.6
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 8.6
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 244 bits (596), Expect = 4e-65
Identities = 113/131 (86%), Positives = 123/131 (93%)
Frame = +2
Query: 29 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 208
MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60
Query: 209 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 388
V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 389 VAKECADLWPR 421
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 234 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 58
+PF+ T + P A ++ R P+ P+ T AP + PT PR I P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188
Query: 57 AEPPRPLLDILLYQNFE 7
+P RP+ I Q F+
Sbjct: 189 QQPFRPIQPIQPQQPFQ 205
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 478 TQLLILNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 347
T LL ++ S RAR+ P + F YRPC R L + ++
Sbjct: 80 TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 3.7
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +2
Query: 80 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 247
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 248 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 331
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 346 DYDTRIVLKVYKYSITPSERFPL 278
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 189 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 97
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical
protein F52B5.5a protein.
Length = 644
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 441 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNR 539
++LE F +++ PSTS S+P N N R R
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKR 475
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 79 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 174
PG P G+ N G CD CP + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription
factor CEP-1 protein.
Length = 644
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 441 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNR 539
++LE F +++ PSTS S+P N N R R
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKR 475
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 70 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 174
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 70 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 174
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +2
Query: 26 KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYV 145
K K+G+GG+A A I +G + VG +I C + A LYV
Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYV 781
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 70 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 174
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 70 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 174
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,043
Number of Sequences: 27780
Number of extensions: 282486
Number of successful extensions: 823
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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