Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c19f
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi...   239   1e-63
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)           239   1e-63
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden...   239   1e-63
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ...    53   1e-07
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ...    53   1e-07
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si...    49   2e-06
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re...    29   1.5  
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    29   2.0  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    28   3.5  
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family...    27   8.0  
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2...    27   8.0  

>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
           to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
           tabacum]
          Length = 140

 Score =  239 bits (584), Expect = 1e-63
 Identities = 106/131 (80%), Positives = 124/131 (94%)
 Frame = +2

Query: 29  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 208
           MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 209 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 388
           ++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 389 VAKECADLWPR 421
           + KECADLWPR
Sbjct: 121 IGKECADLWPR 131


>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
          Length = 140

 Score =  239 bits (584), Expect = 1e-63
 Identities = 106/131 (80%), Positives = 124/131 (94%)
 Frame = +2

Query: 29  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 208
           MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 209 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 388
           ++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 389 VAKECADLWPR 421
           + KECADLWPR
Sbjct: 121 IGKECADLWPR 131


>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
           identical to GB:AAB80655
          Length = 140

 Score =  239 bits (584), Expect = 1e-63
 Identities = 106/131 (80%), Positives = 124/131 (94%)
 Frame = +2

Query: 29  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 208
           MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 209 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 388
           ++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 389 VAKECADLWPR 421
           + KECADLWPR
Sbjct: 121 IGKECADLWPR 131


>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 172

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
 Frame = +2

Query: 86  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 256
           + +G V+   DN+GAK   V+ +Q +KG+      A  GD IVA+VK+  P  + K   V
Sbjct: 47  IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100

Query: 257 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 400
           +  VV+R      R DG  + F+DNA V+V++K +         G+ + GPV  E
Sbjct: 101 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155


>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 173

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
 Frame = +2

Query: 86  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 256
           + +G V+   DN+GAK   V+ +Q +KG+      A  GD IVA+VK+  P  + K   V
Sbjct: 48  IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101

Query: 257 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 400
           +  VV+R      R DG  + F+DNA V+V++K +         G+ + GPV  E
Sbjct: 102 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156


>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
           similar to GB:Z98756 from (Mycobacterium leprae)
          Length = 196

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
 Frame = +2

Query: 86  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV--- 256
           + +G ++ C DN+ AK   V+ +Q ++G+      A  GD+IV +VK+  P ++KKV   
Sbjct: 49  IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKD 102

Query: 257 -MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 370
            +P            VV+R   P  R DG  + F+DNA V+V  K E KG
Sbjct: 103 AIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151


>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
           oxygenase-related contains weak hit to Pfam PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 286

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 346 DYDTRIVLKVYKYSITPSE-RFPL--PDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 176
           D+  +++L+V  +    +E  F +  PD+  ++  FPE   T+FD  +      G  +  
Sbjct: 91  DFSEKLLLEVENFRKWANETNFTIRRPDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDA 150

Query: 175 QATFDTLDSDHIQILC 128
              F   DSD    +C
Sbjct: 151 DVGFHVEDSDITLNVC 166


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 262 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 173
           R YL PEF+F          P  GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 334 RIVLKVYKYSITPSERFPLPDDHCRHYL 251
           RI L V K  + P    P P  +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360


>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 615

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 218 WPQSCPRNRPPAVCSGDL*YLGQRSHTD 135
           WP S  + + P +CS  + Y+   SH D
Sbjct: 96  WPTSGGKEKTPYICSSPIKYMYCNSHPD 123


>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
           (YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
           1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
           cytochrome P450 (CYP76C2), partial cds GI:13122289
          Length = 512

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 141 YRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDIL 25
           +  F  VLS  +I   T RPR  R   P+ P  P L I+
Sbjct: 10  FPLFCFVLSFFIIFFTTTRPRSSRKVVPSPPGPPRLPII 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,028
Number of Sequences: 28952
Number of extensions: 263866
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)