Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c18r
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    35   0.063
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   5.5  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   5.5  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -2

Query: 409 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSXTVIAPLTP 230
           +VT  T        ++P    TT   S + PP  ++T + +T+      V  T IAP+T 
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466

Query: 229 SNTT 218
            +TT
Sbjct: 467 PSTT 470


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 400 PKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST 299
           PKT+P    P ++P CW+     +     PP+ N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -1

Query: 503  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 348
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 347  NNRVYFKIMSTEDK 306
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -1

Query: 503  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 348
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 347  NNRVYFKIMSTEDK 306
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 346 TTEYTSRSCPPKTNST*SSITRKVLVMTVSXTVIAPLTPSNTT 218
           TTE  S + PP  ++T + +T+      V  T IAP+T  +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +3

Query: 273 RTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQLEG 452
           R F  +E+ +  + G        ++  HGGK+PG          T C++   L+ D++ G
Sbjct: 273 RVFEGLEMAITSIDGADRTNFIQLIEDHGGKVPG------TMSKTRCSY---LISDKITG 323

Query: 453 VMVPFVYELDSL 488
           V      E  S+
Sbjct: 324 VKYAKAVEWKSM 335


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 590 KRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQTVKLINKRDHHALKLI 438
           K+N +D     WT+   E +KSY  F  + R  FTE   K  N+++ + + LI
Sbjct: 210 KKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE-LQKRWNRKNEYIISLI 261


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -1

Query: 572 FAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 393
           FA Q W  D K  +K+   IQ+    TE+   + N       + + ++N N++    SK 
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303

Query: 392 KTSKKVS 372
           KT    S
Sbjct: 304 KTQHSTS 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,715
Number of Sequences: 27780
Number of extensions: 338022
Number of successful extensions: 1161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)