Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c17r
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 226 2e-59
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 226 2e-59
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 225 2e-59
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 224 7e-59
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 219 2e-57
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 216 2e-56
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 129 3e-35
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 120 2e-27
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 3.1
02_02_0106 + 6814391-6817007,6817086-6817462 29 4.1
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 7.2
04_04_1588 - 34633057-34633824 28 7.2
06_03_1237 + 28602250-28604196 28 9.5
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564... 28 9.5
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 226 bits (552), Expect = 2e-59
Identities = 107/155 (69%), Positives = 126/155 (81%)
Frame = -3
Query: 743 GKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVE 564
GK+E EL +I +L LL+ HL+P ++ PESKVFYLKMKGDYYRYLAE TG R E
Sbjct: 94 GKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAE 153
Query: 563 DSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAEL 384
++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+EL
Sbjct: 154 NTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISEL 213
Query: 383 DTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 279
DTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 214 DTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 226 bits (552), Expect = 2e-59
Identities = 106/148 (71%), Positives = 124/148 (83%)
Frame = -3
Query: 743 GKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVE 564
GK+E EL +I +L LLD HL+P ++ PESKVFYLKMKGDYYRYLAE TG R E
Sbjct: 312 GKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAE 371
Query: 563 DSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAEL 384
++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+EL
Sbjct: 372 NTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISEL 431
Query: 383 DTLNEDSYKDSTLIMQLLRDNLTLWTSD 300
DTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 432 DTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 225 bits (551), Expect = 2e-59
Identities = 110/159 (69%), Positives = 126/159 (79%), Gaps = 1/159 (0%)
Frame = -3
Query: 743 GKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVE 564
GK+E EL +I +L LLD HL+P ++ ESKVFYLKMKGDY+RYLAE TG R E
Sbjct: 88 GKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAE 147
Query: 563 DSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAEL 384
+ AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPDKAC LAKQAFD+AI+EL
Sbjct: 148 STMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISEL 207
Query: 383 DTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 270
DTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 208 DTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 224 bits (547), Expect = 7e-59
Identities = 105/155 (67%), Positives = 122/155 (78%)
Frame = -3
Query: 743 GKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVE 564
GK+E EL I +L LLD HL+P A ESKVFYLKMKGDY+RYLAE +G+ R E
Sbjct: 71 GKIEAELARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDERKQAAE 130
Query: 563 DSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAEL 384
+ AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+EL
Sbjct: 131 STMNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISEL 190
Query: 383 DTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 279
D+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 191 DSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 219 bits (536), Expect = 2e-57
Identities = 107/162 (66%), Positives = 125/162 (77%)
Frame = -3
Query: 764 ANGKRI*GKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 585
A+ K ++E EL +I +L LLD HL+P A+ ESKVFYLKMKGDY+RYLAE +G
Sbjct: 86 ASIKEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGA 145
Query: 584 TRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 405
R E++ AY+ A +I+ A + THPIRLGLALNFSVFYYEILNSPD+AC LAKQAF
Sbjct: 146 ERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205
Query: 404 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 279
DDAIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 206 DDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 216 bits (527), Expect = 2e-56
Identities = 103/154 (66%), Positives = 122/154 (79%)
Frame = -3
Query: 740 KVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVED 561
+VE EL I +L LLD+ L+P A+ ++KVFYLKMKGDY+RYLAE TG R +
Sbjct: 99 RVEAELSNICAGILRLLDERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAERKDAADA 158
Query: 560 SQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELD 381
+ AYQ A +I+ ++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD
Sbjct: 159 TLAAYQAAQDIAMKELSPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELD 218
Query: 380 TLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 279
TL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 219 TLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 129 bits (312), Expect(2) = 3e-35
Identities = 61/93 (65%), Positives = 73/93 (78%)
Frame = -3
Query: 539 AFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSY 360
A + ++ + PT PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++Y
Sbjct: 146 ASKTAQTDLTPTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENY 205
Query: 359 KDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 261
KDSTLIMQLLRDNL LW SD D D+ E D
Sbjct: 206 KDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238
Score = 37.1 bits (82), Expect(2) = 3e-35
Identities = 26/66 (39%), Positives = 33/66 (50%)
Frame = -3
Query: 740 KVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVED 561
KVE E+ +I DV+ ++DK KGDYYRYLAE TG + V E
Sbjct: 66 KVEAEMDKICCDVINIIDK------------------KGDYYRYLAEFKTGTEKIEVSEL 107
Query: 560 SQKAYQ 543
S AY+
Sbjct: 108 SLNAYE 113
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 120 bits (288), Expect = 2e-27
Identities = 69/159 (43%), Positives = 100/159 (62%)
Frame = -3
Query: 767 TANGKRI*GKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG 588
T NG + KVE ELR + +VL ++ H +P A++ E+ VF+ KMKGDYYRYLAE +TG
Sbjct: 79 TINGYK--KKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTG 136
Query: 587 ETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQA 408
+ + + S AYQ A+ ++ FS+ EI+NSP++A Q+AKQA
Sbjct: 137 TEKKAATDQSLMAYQ-AWPCAQL---------------FSLL--EIMNSPERASQVAKQA 178
Query: 407 FDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 291
D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 179 LDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -3
Query: 470 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 297
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 296 QGDGDEPAEGGDN*YLAA 243
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 210 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 52
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -3
Query: 728 ELREIXYDVLGLLDKHLIPKASNPES-----KVFYLKMKG 624
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKG 110
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 222 KCVCWGECGEILVVAALGRLVAIALSV*RPK 314
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>06_03_1237 + 28602250-28604196
Length = 648
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -3
Query: 698 GLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKA 519
GL+D + + SKVFY + + Y Y + +A G H ++ +++ +++A
Sbjct: 314 GLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIA-GLASHGRASEAIALFKEM--VNRA 370
Query: 518 KMQPTHPIRLGL 483
++P H +G+
Sbjct: 371 NVEPNHVTFIGV 382
>01_07_0228 -
42154400-42154498,42155120-42155196,42156341-42156425,
42156511-42156956,42157070-42157194,42157273-42157523
Length = 360
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -3
Query: 725 LREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAY 546
L + YD +G D +I + P+ + K KGDY LAEV H V++D K+
Sbjct: 160 LTKSFYDFIGSTDCTVIKLRNYPDD--WDEKKKGDYLLTLAEV-----NHGVLKDKLKSR 212
Query: 545 QD 540
D
Sbjct: 213 DD 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,723,406
Number of Sequences: 37544
Number of extensions: 399010
Number of successful extensions: 1108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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