Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c16r
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.50 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 150 QNNFHKLESFGQQTHHHWNSFSREQNQRK 64
           QN+ H L+S   Q HH      ++Q QR+
Sbjct: 145 QNHHHHLQSTAVQDHHRPYQQQQQQQQRQ 173


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 712 NLLIYPNGFAFGVPSLXVYQN 774
           N+LIYPNG    VP   +YQ+
Sbjct: 130 NVLIYPNGDVLWVPP-AIYQS 149



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 543 NLLIYPNGFVFVVLSLPIYQN 605
           N+LIYPNG V  V    IYQ+
Sbjct: 130 NVLIYPNGDVLWV-PPAIYQS 149


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = -2

Query: 624 SQQTQTNFDKLEDLGQQTQNHWGKLEDLGQQTQNQWDNLENLGQQTQDSWGKADELSQQT 445
           S+ ++ N ++++ + QQ   + G    L  +T    + L     +  +   K  + S   
Sbjct: 491 SKSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEEEKKKTKQSLSP 550

Query: 444 QTNFDKLEDLGQQTQK 397
             N  K+E L + TQ+
Sbjct: 551 SENQSKMEILPKTTQR 566


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 19  NQHQTISQESSSGISLTLILFSAKTVPVMMCLLSKAFKFMK 141
           N H         GI+ TLI F  +  P    L+ + +K MK
Sbjct: 62  NNHCNRCTSRQIGIANTLIPFMQQNYPYEWQLILRRYKIMK 102


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 176 LSQLSCV--C*PKFSSFPH*FCVCCPKSSSLS 265
           +S+L+ V  C  KF S+PH   +C     SLS
Sbjct: 123 MSKLTLVLSCAMKFESYPHDTQICSMMIESLS 154


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 408 QTQKHWGKLEDLGQQTQNQRRNLENLGQQTQDS 310
           Q Q+H+G    + QQTQ+ ++  +  G     S
Sbjct: 23  QHQQHYGAAVQVPQQTQSVQQQSQQAGDPCDPS 55


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 655 CLLTQNFQGCPIDFV 699
           CL  Q F  C ID+V
Sbjct: 111 CLTAQKFSRCVIDYV 125


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 434 LINWKTWDNKH 402
           LI WK WD K+
Sbjct: 262 LIKWKNWDLKY 272


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 143 LF*VCWLKSFALSQLSCVC 199
           +F +CWL  F  + +  +C
Sbjct: 627 VFLICWLPFFTCNIMDAIC 645


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 843 NLKFGSPTPDSWVS*DLSQQTQNIL 769
           N  FG+   D WVS D+   T +IL
Sbjct: 106 NWSFGTIMCDLWVSFDVLSCTASIL 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,011
Number of Sequences: 438
Number of extensions: 5364
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)