Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c16f
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   0.90 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.6  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   2.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.7  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    21   6.3  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   6.3  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   6.3  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 384 AGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHY 530
           +GFYGS ++   ++ G + ++      A+ S   +   S  A +++ H+
Sbjct: 8   SGFYGSHHHQSGSVAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHH 56


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 162 FLYKAQVWPKPTPIVRQ 112
           +L  A + PKPTP+V Q
Sbjct: 229 YLQAASMLPKPTPLVPQ 245


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 270 MDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNL 425
           M++  +  LSG +SQ+ G  G+  S +   S+  +      YG+ ++  S L
Sbjct: 1   MENETEPLLSGVVSQINGNSGD--STSSATSIDLSTFRVPTYGTTSHPTSKL 50


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 270 MDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNL 425
           M++  +  LSG +SQ+ G  G+  S +   S+  +      YG+ ++  S L
Sbjct: 1   MENETEPLLSGVVSQINGNSGD--STSSATSIDLSTFRVPTYGTTSHPTSKL 50


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = -2

Query: 379 FAAVYTLPVLVF 344
           F+A+Y+LP+L+F
Sbjct: 149 FSALYSLPILIF 160


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 341  SLLAQLSFNL*DRAAQMSLSK*IHVVSTFKITPHVSSLRTI 219
            S+  QL  N    A Q++L+       TFK+ PH S +  I
Sbjct: 1386 SVTHQLIVNAPPHAPQIALTSTTTNSLTFKLKPHESDVEPI 1426


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 291 VFEQVNPCCEHVQNYPPC 238
           VF+ V   C+ V+N P C
Sbjct: 214 VFDDVGKKCDWVRNVPEC 231


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 294 LSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGN 407
           L G + QV+G+LG  G+      +  A + A     GN
Sbjct: 13  LIGVVYQVQGQLGLAGNNYIEKQLLCALDKAPCDALGN 50


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 171 SLLFLYKAQVWPK 133
           SLLFL  A+ WPK
Sbjct: 99  SLLFLNLAKRWPK 111


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 171 SLLFLYKAQVWPK 133
           SLLFL  A+ WPK
Sbjct: 99  SLLFLNLAKRWPK 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,495
Number of Sequences: 336
Number of extensions: 3038
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)