Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c16f
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 31 0.10
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 30 0.24
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.41
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 29 0.41
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.3
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 27 1.7
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 27 2.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 2.9
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 27 2.9
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 2.9
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 3.8
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 5.1
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 5.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 6.7
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 6.7
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 8.9
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 8.9
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 25 8.9
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 31.5 bits (68), Expect = 0.10
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +3
Query: 237 NMGGNFERAHNMDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDL 416
N N N +S+ + LS LG G+ + +++G Y + N
Sbjct: 528 NTSNNNSNTSNNESMVSK-LSSLSGMASSFLGSSGNNNNNNN-----SNSGNYNNNNSGN 581
Query: 417 SNLRGRNFQEGTYLDNAHSSLL--SNAQYSTQAINRNSHYSNSQFSNSNYRNSHRAS 581
+N + + Q + L SS L S+ + Q N N++ + +N NY N++ +S
Sbjct: 582 NNQQHQ--QSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQNYNNNNNSS 636
Score = 26.6 bits (56), Expect = 2.9
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Frame = +3
Query: 252 FERAHNMDSLAQRH-LSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLR 428
F+ + + LAQ L+ A G L GS ++++ + N + SN
Sbjct: 474 FQNRNLLTKLAQSGVLTNAAQGSSGGLSAAAVSGLIGSFMGSSSNNSNSSNNNSNTSNNN 533
Query: 429 GRNFQEGTYLDNAHS-SLLSNAQYSTQAINRNSHYSNS-QFSNSNYRNSHRASPSQSQHI 602
+ + S S ++++ + N N++ SNS ++N+N N+++ S +
Sbjct: 534 SNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSL 593
Query: 603 SDLQAS 620
L +S
Sbjct: 594 QGLASS 599
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 112 LPHYRRWLW--PNLSFIKKKKTFTILEVRRTKVASLDFMVRKEETWGVILNVLTTWIHLL 285
LP + W P+ + + KK + + + + V +++WG I+ V+ T ++ L
Sbjct: 827 LPFFALWFENIPSFTRVHDKKLSLVAILSVISLGAQQVAVAIQDSWGNIMKVMITLLNTL 886
Query: 286 KDI*AARSHKLKE 324
+ AAR+ KE
Sbjct: 887 PEALAARAELEKE 899
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 465 AHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPS 587
AH+ + ++ Q S+Q+ N+N SN+Q ++N S + S S
Sbjct: 69 AHARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMSDKESDS 109
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 519 NSHYSNSQFSNSNYRNSHRASPSQSQHISDLQA 617
N +SQ +N N NS+ +PS ++ +SD ++
Sbjct: 75 NDLQMSSQSANKNDDNSNNQNPSNNKEMSDKES 107
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 29.5 bits (63), Expect = 0.41
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 GELGEEGSKTRT-GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQ 494
G G + + +T G+V +A S YG G Y N + T NA ++ NAQ
Sbjct: 221 GSYGNDNTANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRNARTTAQRNAQ 279
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 513 NRNSHYSNSQFSN-SNYRNSHRASPSQSQHISDLQA 617
NR S + NSQ+S +N++N+ SP+ S + LQA
Sbjct: 234 NRVSSFQNSQYSTLNNFQNNSNQSPN-SNDLQPLQA 268
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 1.7
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Frame = +3
Query: 228 QRGNM---GGNFERAHNMDSLAQRHLSGAISQVEGELGEEGSK-TRTGSVYTAANSAGFY 395
QRG+ GGN +R+ N++ +R + + +L ++ S+ + T ++ +N +
Sbjct: 412 QRGSYNREGGNMDRSRNVNYQPKRQQN--FKPLTSDLPQKNSEFSETNAMNQTSNHSHAD 469
Query: 396 GSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHR 575
G Y R + + + D S+ Q A N +S Y N+ + R S
Sbjct: 470 GQRYYRPEQDRSQRLRNPS--DYGRQGRQSS-QSQQPAWNVSSRYQNNSKVQTTSRASEN 526
Query: 576 ASPSQSQH 599
A +++QH
Sbjct: 527 ADTNKTQH 534
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 262 LTTWIHLLKDI*AARSHKLKESWARRDQKPERV 360
LT + +KD+ + +H LKE RRDQK + V
Sbjct: 253 LTLLLDTIKDV-ESYAHSLKELLKRRDQKQQDV 284
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 242 HVSSLRTIKSRLATFVRRTSRIVKVFFFFIKLR 144
HVS L K+ L+ F R ++ + F F+KL+
Sbjct: 36 HVSYLIITKTNLSIFTRAECKVRRRFSDFVKLQ 68
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 414 LSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQS 593
LSNL+ R G YLD++ + L + S + + + S +N + +PS++
Sbjct: 216 LSNLKSRLDLAGEYLDDSIMNDLGDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSEN 275
Query: 594 QHISDLQ 614
H+S Q
Sbjct: 276 VHLSARQ 282
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 411 DLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRN 566
+++N+ RNFQ G + + SSL +N Q A N ++ +N N+N N
Sbjct: 264 NIANM-ARNFQSGGGMPDL-SSLANNPQLQNLARNFMNNNNNGNTDNNNQGN 313
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 459 DNAHSSLLSNAQYSTQAINRNSHYSN--SQFSNSNYRNSHRASPSQSQH 599
DN + + S + ++ H+ + S F N +S +SPS+S+H
Sbjct: 327 DNWDNEFQGTLKISDDVLKKSEHFMDFCSNFKGKNNSSSITSSPSKSRH 375
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 417 SNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYR-NSHRASPS 587
SN +F G N S ++N S N N+ S+ Q N N N H +S S
Sbjct: 380 SNTFSPDFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRS 437
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 3.8
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 324 ELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYST 503
++GE K R S + N + S + D+ LRG + LD + + Y +
Sbjct: 679 QVGESLKKWRLTSRFCLGNLHDWNTSSSVDVGELRGIDKLALVQLDKFQTEI--RELYES 736
Query: 504 QAINRNSHYSNSQFSNS 554
+IN+ H+ N F NS
Sbjct: 737 YSINKVVHHLN-YFMNS 752
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 5 SIYAACELPGFVCEYLALFQLLSVWINQNHETTTS 109
+IYA + P +C + L ++ NHE TTS
Sbjct: 771 AIYAVAKHPDELCTNIILLLTKQLFKPSNHENTTS 805
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 FCLPH-YRRWLWPNLSFIKKKKTFTILEVRRTKVASLDFMVRK 231
FC+P R+ +W +L ++ + T+ T SLD +RK
Sbjct: 169 FCIPSPCRKLVWQSLVSAERNELLTLYATLSTTNNSLDSSIRK 211
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 483 SNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQS 593
SN+ YST ++ + H ++ NSN+ + A+ + +
Sbjct: 318 SNSNYSTTRVDNDPHVASYSPQNSNFDHQAAATTNDA 354
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 403 PDP*KPAEFAAVYTLPVLVFDPSSPNSPSTCEI 305
P P + ++F V LP+ + SSPN S EI
Sbjct: 285 PPPWRDSDFETVPKLPIFYPNSSSPNFFSLSEI 317
>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 279 VNPCCEHVQNYPPCFLFAHHKIQTCYLRPTNF*NSESLLFLY 154
+NPC N+ + KI+ L T+F ++E++ FLY
Sbjct: 49 LNPC-----NFSKSLFWLRKKIKNSVLLKTSFDSNETIFFLY 85
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 205 ASLDFMVRKEETWGVILNVLTTWIH 279
A+L +R+E TWG + + TT IH
Sbjct: 23 ATLPLAIRRELTWGQVNILHTTDIH 47
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 8.9
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = +3
Query: 348 TRTGSVYTAANSAGFYGSGNYDLSNLRGR-----NFQEGTYLD---NAHSSLLSNAQYST 503
T+T V +A+NS GS ++ R NF E + D N+H S + Y
Sbjct: 264 TQTTQV-SASNSPALSGSSTPSNTSSRSNRQNHGNFSEKRHYDRYGNSHPSYNKYSHYQH 322
Query: 504 QAINRNSHYSNSQFSNSNYRNSHRASPSQSQH 599
NS + ++ + +RNS R +Q +
Sbjct: 323 GFNYNNSGNNRNESGHPRFRNSRRNYNNQGAY 354
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 459 DNAHSSLLSNA-QYSTQAINRNSHYSNSQFSNSNYRNSHRAS 581
+ ++S+ +NA YS NS+ SNS N+N +++ +S
Sbjct: 20 EESNSNTATNAPSYSVGGTTANSYSSNSYNDNNNSNSTYGSS 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,719
Number of Sequences: 5004
Number of extensions: 50162
Number of successful extensions: 185
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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