Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c16f
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225...    34   0.080
03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363...    33   0.24 
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282...    29   4.0  
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686...    28   6.9  
08_02_1351 + 26318023-26318665,26319386-26319543,26320843-263209...    27   9.2  

>05_07_0257 +
           28719980-28720220,28721412-28721455,28722521-28722590,
           28722693-28722816,28723420-28724060,28725100-28725364,
           28725434-28725713,28726042-28726209,28726867-28727358,
           28727432-28727689
          Length = 860

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 31/127 (24%), Positives = 50/127 (39%)
 Frame = +3

Query: 243 GGNFERAHNMDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSN 422
           G  FE  +N DS  + ++S    Q E  +  E  K+++     A          N D ++
Sbjct: 366 GNAFE--NNRDS--EGNMSATDKQFEQLILHEEKKSKSSEDNPAVIIPDHLQVSNADCAH 421

Query: 423 LRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQHI 602
           L   +F  GT LD   S   +N      A++ N     S      Y N    +P+  +H+
Sbjct: 422 LTFGSFVSGT-LDAPVSLKTANGDEEVAAVSDNHSIDQSDVRIHEYENKDTVAPAADEHV 480

Query: 603 SDLQASD 623
           +    SD
Sbjct: 481 ASSTKSD 487


>03_01_0471 +
           3629158-3629185,3630027-3630058,3630272-3630344,
           3630745-3630969,3631319-3631789,3632286-3633118
          Length = 553

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
 Frame = +3

Query: 279 LAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYL 458
           +++R  S +IS++    G   S     S +T + +     S N DLSN+  R     ++L
Sbjct: 342 ISRRPSSQSISRIYAASGTPNSPNPIRS-FTNSTAMSISRS-NVDLSNMSSR--PRASHL 397

Query: 459 DNAHS---SLLS---NAQYSTQAINRNS------HYSNSQFSNSNYRNSHRASPSQSQHI 602
            +AHS   S LS   N +Y++  ++ +       H S+S  SNS Y +S     S SQH 
Sbjct: 398 ASAHSLVGSHLSPPINIRYASPHMSHSGYASPSPHVSSSYVSNSGYGSSSYYLGSSSQHR 457

Query: 603 SDLQ 614
           S L+
Sbjct: 458 SYLR 461


>02_03_0218 +
           16526082-16526375,16526606-16526725,16528078-16528238,
           16528601-16528634,16529296-16529398,16529784-16529963,
           16530726-16530742
          Length = 302

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 288 RHLSGAISQVEGELGEEGSKTRT--GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLD 461
           R  + A   +E   G+  S+ R    S Y   N    +GS + D     GR+F+      
Sbjct: 235 RERAFAPMNMENNFGQHDSRFRNRHDSNYAPRNMENKFGSNDSDFGTQSGRSFRHDPSFR 294

Query: 462 NAHSS 476
           N H S
Sbjct: 295 NQHGS 299


>09_06_0235 -
           21763470-21764511,21767865-21768261,21768625-21768632,
           21769489-21769565
          Length = 507

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 297 SGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSS 476
           +G + Q  G  G  G     GS+ T++  AG +G G     +L   +   GT    + ++
Sbjct: 327 NGGVDQFNGGAGNGGQ----GSIVTSSGLAGNHGGGGGGFPSLYNSSEPAGTLPQMSATA 382

Query: 477 LLSNA 491
           LL  A
Sbjct: 383 LLQKA 387


>08_02_1351 +
           26318023-26318665,26319386-26319543,26320843-26320930,
           26321953-26322185
          Length = 373

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -3

Query: 408 NFPIHKSPQNLQQCTRYPFWFLIPPRPTLLQLVRSRRSNVFEQVNPCCEHVQNYPP 241
           N P+    Q+L Q     F+FL+P R        +R   +  Q  P   +V+   P
Sbjct: 94  NHPVKLDSQDLLQIGDKKFYFLLPTRSIFASAAAARHPPIIPQQMPPPSYVRTGRP 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,830
Number of Sequences: 37544
Number of extensions: 315107
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)