Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c16f
         (623 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M95586-1|AAA58445.1|  574|Homo sapiens E2A/HLF fusion protein pr...    32   1.9  
M31523-1|AAA61146.1|  654|Homo sapiens TCF3 protein.                   32   1.9  
M31222-1|AAA52331.1|  648|Homo sapiens TCF3 protein.                   32   1.9  
BC110579-1|AAI10580.1|  651|Homo sapiens TCF3 protein protein.         32   1.9  
BC057783-1|AAH57783.1|  275|Homo sapiens SFRS2B protein protein.       32   1.9  
AF031166-1|AAK54351.1|  272|Homo sapiens SRp46 splicing factor p...    32   1.9  
AF031165-1|AAK54350.1|  282|Homo sapiens SRp46 splicing factor p...    32   1.9  
AC005321-2|AAC27373.1|  606|Homo sapiens TFE2_HUMAN protein.           32   1.9  

>M95586-1|AAA58445.1|  574|Homo sapiens E2A/HLF fusion protein
           protein.
          Length = 574

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 381 SAGFYGSGNYDLSNLR-GRNFQEGTYLDNAHSSLLSN 488
           S+G +GSG+   S+    R F EGT+   +HSSL S+
Sbjct: 55  SSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSS 91


>M31523-1|AAA61146.1|  654|Homo sapiens TCF3 protein.
          Length = 654

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 381 SAGFYGSGNYDLSNLR-GRNFQEGTYLDNAHSSLLSN 488
           S+G +GSG+   S+    R F EGT+   +HSSL S+
Sbjct: 55  SSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSS 91


>M31222-1|AAA52331.1|  648|Homo sapiens TCF3 protein.
          Length = 648

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 381 SAGFYGSGNYDLSNLR-GRNFQEGTYLDNAHSSLLSN 488
           S+G +GSG+   S+    R F EGT+   +HSSL S+
Sbjct: 49  SSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSS 85


>BC110579-1|AAI10580.1|  651|Homo sapiens TCF3 protein protein.
          Length = 651

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 381 SAGFYGSGNYDLSNLR-GRNFQEGTYLDNAHSSLLSN 488
           S+G +GSG+   S+    R F EGT+   +HSSL S+
Sbjct: 55  SSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSS 91


>BC057783-1|AAH57783.1|  275|Homo sapiens SFRS2B protein protein.
          Length = 275

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +3

Query: 330 GEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHS-SLLSNAQYSTQ 506
           G  G ++R+      + S G   S +   S  RG  +    Y  + +S S  S + YS  
Sbjct: 112 GGYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYGRSPYSRSPYSRSRYSRSPYSRS 171

Query: 507 AINRN----SHYSNSQFSNSNYRNSHRASPSQSQ 596
               +    SHYS+S +SNS Y   H +S S S+
Sbjct: 172 RYRESRYGGSHYSSSGYSNSRYSRYH-SSRSHSK 204


>AF031166-1|AAK54351.1|  272|Homo sapiens SRp46 splicing factor
           protein.
          Length = 272

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
 Frame = +3

Query: 339 GSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHS-SLLSNAQYSTQAIN 515
           G ++R+      + S G   S +   S  RG  +    Y  + +S S  S + YS     
Sbjct: 112 GRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR 171

Query: 516 RN----SHYSNSQFSNSNYRNSHRASPSQSQ 596
            +    SHYS+S +SNS Y   H +S S S+
Sbjct: 172 ESRYGGSHYSSSGYSNSRYSRYH-SSRSHSK 201


>AF031165-1|AAK54350.1|  282|Homo sapiens SRp46 splicing factor
           protein.
          Length = 282

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
 Frame = +3

Query: 339 GSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHS-SLLSNAQYSTQAIN 515
           G ++R+      + S G   S +   S  RG  +    Y  + +S S  S + YS     
Sbjct: 122 GRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR 181

Query: 516 RN----SHYSNSQFSNSNYRNSHRASPSQSQ 596
            +    SHYS+S +SNS Y   H +S S S+
Sbjct: 182 ESRYGGSHYSSSGYSNSRYSRYH-SSRSHSK 211


>AC005321-2|AAC27373.1|  606|Homo sapiens TFE2_HUMAN protein.
          Length = 606

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 381 SAGFYGSGNYDLSNLR-GRNFQEGTYLDNAHSSLLSN 488
           S+G +GSG+   S+    R F EGT+   +HSSL S+
Sbjct: 7   SSGSWGSGDQSSSSFDPSRTFSEGTHFTESHSSLSSS 43


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,223,027
Number of Sequences: 237096
Number of extensions: 1693972
Number of successful extensions: 3513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3509
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)