Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c16f
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 34 0.072
Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical pr... 34 0.072
AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein. 34 0.072
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 32 0.38
U13642-4|AAG00043.2| 687|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 29 3.6
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 29 3.6
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF000194-5|AAK39377.2| 616|Caenorhabditis elegans Hypothetical ... 28 6.2
U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of c... 27 8.2
U55364-5|AAQ23124.1| 368|Caenorhabditis elegans Prion-like-(q/n... 27 8.2
U55364-4|AAA97972.1| 382|Caenorhabditis elegans Prion-like-(q/n... 27 8.2
U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fb... 27 8.2
AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrat... 27 8.2
>Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical
protein F13E9.4 protein.
Length = 409
Score = 34.3 bits (75), Expect = 0.072
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Frame = +3
Query: 219 YGAQRGNMGGNFERAHNMDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYG 398
YG Q ++ + + + SG+++ G+ G ++ G + +G +G
Sbjct: 113 YGQQAFAQQQRPQQGFQSNGFSGQQASGSMNSFGGQGGYGQNQNGFGGQSGFSGQSG-WG 171
Query: 399 SGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFS-NSNYRNSHR 575
S + +N G N Q G+ ++ Q + + NS SN+ +S NS Y N++
Sbjct: 172 SNSLSSANSNGNNNQ-GSSSGYQNNQGRHQGQGGGHSSSSNSVMSNNGYSSNSGYGNNNG 230
Query: 576 ASPSQSQHISDLQASD 623
+PS ++S A D
Sbjct: 231 PTPSFLNNVSSSAAQD 246
>Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical
protein T22H6.7 protein.
Length = 195
Score = 34.3 bits (75), Expect = 0.072
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 339 GSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAI-- 512
G+ + Y N+ + + Y+ +N G Q N++S+ SN QYS Q
Sbjct: 105 GNNNGYNNGYNNGNNMRYNDNNGYNTNN--GYRGQPTPGYGNSNSNFNSNQQYSYQQYYN 162
Query: 513 NRNSHYSNSQFSNS 554
NRN+ Y NS + N+
Sbjct: 163 NRNNQYGNSGYGNA 176
>AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein.
Length = 195
Score = 34.3 bits (75), Expect = 0.072
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 339 GSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAI-- 512
G+ + Y N+ + + Y+ +N G Q N++S+ SN QYS Q
Sbjct: 105 GNNNGYNNGYNNGNNMRYNDNNGYNTNN--GYRGQPTPGYGNSNSNFNSNQQYSYQQYYN 162
Query: 513 NRNSHYSNSQFSNS 554
NRN+ Y NS + N+
Sbjct: 163 NRNNQYGNSGYGNA 176
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical protein
T21B10.3 protein.
Length = 1170
Score = 31.9 bits (69), Expect = 0.38
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 3/127 (2%)
Frame = +3
Query: 228 QRGNMGGNFERAHNMDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGN 407
Q G G N R N + SG + G V+ Y + +
Sbjct: 921 QTGYQGKN--RRSNFEQPTSSRGSGRSDRTYAYKGNRFQPVNDSHVFAPRERENVYQNSS 978
Query: 408 YDLS---NLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRA 578
+D N QE YLD+ S + S + R S +S++ N N+ N
Sbjct: 979 HDRDIPRNDYSEYDQEKLYLDDKQPRFHSENRNSND-VRRYSESKDSKYDNKNWNNRSSR 1037
Query: 579 SPSQSQH 599
PS+S++
Sbjct: 1038 WPSESEY 1044
>U13642-4|AAG00043.2| 687|Caenorhabditis elegans Hypothetical
protein ZC395.8 protein.
Length = 687
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/108 (22%), Positives = 48/108 (44%)
Frame = +3
Query: 276 SLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTY 455
SL + A + +E + E S R+ S ++N D SN RN+ ++
Sbjct: 566 SLLPTRILSATNVLENKYNENVSSRRSTSRERSSNRNYDERWSRNDYSN--PRNYSNRSF 623
Query: 456 LDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQH 599
S+ ++++ ++RN++ +NS+ + + R S S S + H
Sbjct: 624 HQRNQRGHSSSNRFNSPFVSRNNYNNNSETTEGSSRRSEYNSSSSNHH 671
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 369 TAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFS 548
+ +NS G+ G G + G N+ G DN + +N N N++Y NS +
Sbjct: 202 SGSNSGGYNGGGG---GSGGGSNWNNG---DNENDGWNNNNNNRKSNNNNNNNYGNSWGT 255
Query: 549 NSNYRNSHRAS 581
N N NS + S
Sbjct: 256 NDNDGNSWKGS 266
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 369 TAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFS 548
+ +NS G+ G G + G N+ G DN + +N N N++Y NS +
Sbjct: 202 SGSNSGGYNGGGG---GSGGGSNWNNG---DNENDGWNNNNNNRKSNNNNNNNYGNSWGT 255
Query: 549 NSNYRNSHRAS 581
N N NS + S
Sbjct: 256 NDNDGNSWKGS 266
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 305 RAAQMSLSK*IHVVSTFKIT--PHVSSLRTIKSRLATFVRRTSRIVKVFFFFIK 150
RA +LS I +TF ++ P ++ +KS AT++ SRI K F ++
Sbjct: 164 RACLRALSSVICWPTTFGMSKIPQIAEAANLKSNAATYLHLRSRIFKTLMFSVR 217
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 305 RAAQMSLSK*IHVVSTFKIT--PHVSSLRTIKSRLATFVRRTSRIVKVFFFFIK 150
RA +LS I +TF ++ P ++ +KS AT++ SRI K F ++
Sbjct: 205 RACLRALSSVICWPTTFGMSKIPQIAEAANLKSNAATYLHLRSRIFKTLMFSVR 258
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 305 RAAQMSLSK*IHVVSTFKIT--PHVSSLRTIKSRLATFVRRTSRIVKVFFFFIK 150
RA +LS I +TF ++ P ++ +KS AT++ SRI K F ++
Sbjct: 164 RACLRALSSVICWPTTFGMSKIPQIAEAANLKSNAATYLHLRSRIFKTLMFSVR 217
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 305 RAAQMSLSK*IHVVSTFKIT--PHVSSLRTIKSRLATFVRRTSRIVKVFFFFIK 150
RA +LS I +TF ++ P ++ +KS AT++ SRI K F ++
Sbjct: 205 RACLRALSSVICWPTTFGMSKIPQIAEAANLKSNAATYLHLRSRIFKTLMFSVR 258
>Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical
protein T06G6.2 protein.
Length = 339
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -3
Query: 534 CYNENFYLSLAYYIARWIT-MRSAHYLGTFLLENY--VPLGY 418
CY +YLS YY++ ++ ++ LGT+ + Y PLGY
Sbjct: 138 CYTPKYYLSHQYYVSIFLLFIQLIFTLGTYYVGLYGVPPLGY 179
>U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical
protein R11G1.6c protein.
Length = 811
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +3
Query: 324 ELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYST 503
EL S+ ++ T F+G LS RGR+ + +D ++ LL A S
Sbjct: 584 ELDVRQSRDKSKKAPTEKRDRSFFGELKDRLSGRRGRSQKRSKSVDVENNQLLEEA-VSL 642
Query: 504 QAINRNSHYSNSQFSNSNYRNSH 572
S + SN YR +H
Sbjct: 643 PPSRDPSRTRYAVSSNDKYRETH 665
>U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical
protein R11G1.6d protein.
Length = 809
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +3
Query: 324 ELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYST 503
EL S+ ++ T F+G LS RGR+ + +D ++ LL A S
Sbjct: 584 ELDVRQSRDKSKKAPTEKRDRSFFGELKDRLSGRRGRSQKRSKSVDVENNQLLEEA-VSL 642
Query: 504 QAINRNSHYSNSQFSNSNYRNSH 572
S + SN YR +H
Sbjct: 643 PPSRDPSRTRYAVSSNDKYRETH 665
>U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical
protein R11G1.6b protein.
Length = 901
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +3
Query: 324 ELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYST 503
EL S+ ++ T F+G LS RGR+ + +D ++ LL A S
Sbjct: 674 ELDVRQSRDKSKKAPTEKRDRSFFGELKDRLSGRRGRSQKRSKSVDVENNQLLEEA-VSL 732
Query: 504 QAINRNSHYSNSQFSNSNYRNSH 572
S + SN YR +H
Sbjct: 733 PPSRDPSRTRYAVSSNDKYRETH 755
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical
protein R11G1.6a protein.
Length = 899
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +3
Query: 324 ELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYST 503
EL S+ ++ T F+G LS RGR+ + +D ++ LL A S
Sbjct: 674 ELDVRQSRDKSKKAPTEKRDRSFFGELKDRLSGRRGRSQKRSKSVDVENNQLLEEA-VSL 732
Query: 504 QAINRNSHYSNSQFSNSNYRNSH 572
S + SN YR +H
Sbjct: 733 PPSRDPSRTRYAVSSNDKYRETH 755
>AF000194-5|AAK39377.2| 616|Caenorhabditis elegans Hypothetical
protein ZC328.3a protein.
Length = 616
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 148 SFIKKKKTFTILEVRRTKVASLD-FMVRKEETWGVILN 258
SFI + K++ +L KVA D + +EE W ++ N
Sbjct: 167 SFINRDKSYQVLTTAHQKVAGEDEKAMTREEVWDMVYN 204
>U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of clr
protein 1 protein.
Length = 430
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 420 NLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQH 599
NLRG Y + + + + N YS +R S+Y S+ S RN P+Q
Sbjct: 329 NLRGEEEAGTRYRNLSRNGVNENGNYSATFSSRTSNYQQSE--TSKRRNLDYFEPTQMIE 386
Query: 600 ISDL 611
S L
Sbjct: 387 NSSL 390
>U55364-5|AAQ23124.1| 368|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform b protein.
Length = 368
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 402 GNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQF---SNSNYRNSH 572
GN +N G Q Y + + SN+Q+ Q N+N Y N+Q+ + N +N
Sbjct: 246 GNTTNTNAIGNTPQRDAY----GNQMGSNSQF--QQANQNGQYQNTQYQQQNGQNGQNQF 299
Query: 573 RASPSQSQHISDLQASD 623
+ S Q+Q+ Q S+
Sbjct: 300 QQSNGQNQNSQYQQTSN 316
>U55364-4|AAA97972.1| 382|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform a protein.
Length = 382
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 402 GNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQF---SNSNYRNSH 572
GN +N G Q Y + + SN+Q+ Q N+N Y N+Q+ + N +N
Sbjct: 260 GNTTNTNAIGNTPQRDAY----GNQMGSNSQF--QQANQNGQYQNTQYQQQNGQNGQNQF 313
Query: 573 RASPSQSQHISDLQASD 623
+ S Q+Q+ Q S+
Sbjct: 314 QQSNGQNQNSQYQQTSN 330
>U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 8 protein.
Length = 535
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 453 YLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQ 614
Y + + SN + IN N Y N Q++ SN ++ Q+Q +DLQ
Sbjct: 91 YCAQENIPISSNVGHVLSTINNN--YMNHQYNGSNMFSNQMTQMLQAQAYNDLQ 142
>AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrate
adaptor proteinSOC-1 protein.
Length = 430
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 420 NLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQH 599
NLRG Y + + + + N YS +R S+Y S+ S RN P+Q
Sbjct: 329 NLRGEEEAGTRYRNLSRNGVNENGNYSATFSSRTSNYQQSE--TSKRRNLDYFEPTQMIE 386
Query: 600 ISDL 611
S L
Sbjct: 387 NSSL 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,674
Number of Sequences: 27780
Number of extensions: 282845
Number of successful extensions: 938
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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