Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c13r
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    30   0.31 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   3.8  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.0  

>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -1

Query: 710 YLGVNCEGIVNLSVRNGTVDQGTRIVSVHPVGAP 609
           Y G + +G+++L VRN  + +G++++ +H  GAP
Sbjct: 294 YEGKSMQGLIHL-VRNNEIAEGSKVLYIHLGGAP 326


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 613 APTGCTDTILVPWSTVPLRTLRFTIPSQFTP 705
           A T CT +  VP+++ P+ +  +TI S  TP
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSS-TP 580



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 619 TGCTDTILVPWSTVPLRTLRFTIPSQFTP 705
           T CT +  VP+++ P+ +  +TI S  TP
Sbjct: 494 TNCTTSTSVPYTSTPVTSSNYTISSS-TP 521


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 500 VVAKNRTGKSNFITSIRETLKTHY 429
           +V +N +GKSNF  +IR  L   Y
Sbjct: 30  IVGRNGSGKSNFFAAIRFVLSDAY 53


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 501 FNYLSGFPFRQQVVSEQRSPGLVVGQLLLEVAAA 602
           FNY   +P  + ++ + R PG++    L E A+A
Sbjct: 474 FNYFREYPGSKDIMLDGRGPGMLEKMYLSEKASA 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,497
Number of Sequences: 5004
Number of extensions: 41991
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)