Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c13r
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794...    30   1.7  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    30   2.3  
05_01_0129 - 872127-872681,872762-873070,873180-873347                 29   3.0  
04_04_1136 - 31142742-31142806,31143245-31143325,31143432-311435...    29   4.0  
02_05_0426 - 28881671-28881753,28882130-28882621,28882802-288828...    29   4.0  
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680           28   7.0  
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652     28   9.2  
06_03_0041 + 15810231-15810614                                         28   9.2  

>12_02_0580 +
           20776820-20777247,20777341-20778109,20779280-20779447,
           20779877-20780236
          Length = 574

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 524 LPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGA 628
           LPSAG    T   SRRW  + G + C  +A+ LG+
Sbjct: 36  LPSAGDVARTTVLSRRWRHLCGIAPCLRFAVGLGS 70


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 634 CRCTQ*ERPRAAAATSSNSCP 572
           CRC+    P AAA+ SS++CP
Sbjct: 22  CRCSSSSSPAAAASASSSACP 42


>05_01_0129 - 872127-872681,872762-873070,873180-873347
          Length = 343

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 356 DFSRAPLCSDAAVDSWL--HYFELD 288
           D S+A LC D  VDSWL   ++ELD
Sbjct: 262 DESQAVLCPDVEVDSWLGIDFYELD 286


>04_04_1136 -
           31142742-31142806,31143245-31143325,31143432-31143588,
           31143695-31143809,31144016-31144083,31144171-31144314,
           31144393-31144470,31144555-31144637,31144729-31144768,
           31144993-31145067,31145202-31145314,31145839-31145878,
           31145977-31146128,31146351-31146405,31146717-31146776,
           31147005-31147268,31148379-31148436,31148606-31148637
          Length = 559

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 671 VRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVI 504
           +R     QG  + +V PV  P+ S   ++++LP D+ R    G   ++EGK   V+
Sbjct: 149 IRRSLGSQGFTLPTVEPV--PESSVSKVEERLPEDKERWWKKGLKAISEGKLAVVL 202


>02_05_0426 -
           28881671-28881753,28882130-28882621,28882802-28882864,
           28883251-28883440,28883534-28883642,28883952-28884363,
           28884967-28885196,28885294-28885403
          Length = 562

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 522 PFRQQVVSEQRSPGLVVGQLLLEVAAAALGRSYWVHRHY 638
           P   Q+V++ + P  VVG     +AAA+ G S+  H  Y
Sbjct: 166 PVETQLVAQSQPPSSVVGSAAAPLAAASNGSSFQNHSLY 204


>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
          Length = 612

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 566 ETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGA 399
           E RT L G  +  E +PG+V+ V+  + +GKS  ++ +   L   +   V+  G A
Sbjct: 54  EERTILKG--ITGEARPGEVLAVLGPSGSGKSTLLSILGGRLAGRHAGTVLAGGRA 107


>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
          Length = 717

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = -3

Query: 651 PRYQNSVGAPSRSAQGQQRLPPATAAQRRDQDCVARKLPADGRETRKGN*SGREEPHGQV 472
           PR Q   G   R  QGQQRL       R  +D   +     G+   + N  G++   G+V
Sbjct: 468 PRPQFMPGQGRRDVQGQQRLCFNCFESRHFEDKCPKPRRQQGQAPPRPNNGGKDVIRGRV 527

Query: 471 QLYHVHPRDI 442
              HV   D+
Sbjct: 528 N--HVTAEDV 535


>06_03_0041 + 15810231-15810614
          Length = 127

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 539 SFRATQSWSRRWAAVAGGSRCCPWALL 619
           S RA+ SW +RW  +   S   PW+ L
Sbjct: 7   SSRASTSWRQRWKGLPSSSTQRPWSRL 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,738,125
Number of Sequences: 37544
Number of extensions: 377400
Number of successful extensions: 1419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)