Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c13r
(755 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007110-1|AAH07110.2| 310|Homo sapiens C11orf54 protein protein. 138 3e-32
AL136605-1|CAB66540.1| 315|Homo sapiens hypothetical protein pr... 138 3e-32
CR533538-1|CAG38569.1| 315|Homo sapiens PTD012 protein. 135 1e-31
BC012298-1|AAH12298.1| 265|Homo sapiens chromosome 11 open read... 61 4e-09
AF079564-1|AAC28392.1| 353|Homo sapiens ubiquitin-specific prot... 31 3.4
AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein. 31 4.5
AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein. 31 4.5
>BC007110-1|AAH07110.2| 310|Homo sapiens C11orf54 protein protein.
Length = 310
Score = 138 bits (333), Expect = 3e-32
Identities = 72/165 (43%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Frame = -1
Query: 554 ALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRG 375
ALL N +EG+PGKVI+V AK RTG NF+T +RETL+ HYG+K +G+GG F+++ G+
Sbjct: 150 ALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKV 209
Query: 374 YFHVMP-DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXX 198
H+MP +FS PL SD V+ WLH++E+ AP LR++
Sbjct: 210 KSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLE----HTHFF 265
Query: 197 XXXXXXXXXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 63
YDTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 266 SRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 310
>AL136605-1|CAB66540.1| 315|Homo sapiens hypothetical protein
protein.
Length = 315
Score = 138 bits (333), Expect = 3e-32
Identities = 72/165 (43%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Frame = -1
Query: 554 ALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRG 375
ALL N +EG+PGKVI+V AK RTG NF+T +RETL+ HYG+K +G+GG F+++ G+
Sbjct: 155 ALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKV 214
Query: 374 YFHVMP-DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXX 198
H+MP +FS PL SD V+ WLH++E+ AP LR++
Sbjct: 215 KSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLE----HTHFF 270
Query: 197 XXXXXXXXXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 63
YDTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 271 SRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 315
>CR533538-1|CAG38569.1| 315|Homo sapiens PTD012 protein.
Length = 315
Score = 135 bits (327), Expect = 1e-31
Identities = 71/165 (43%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Frame = -1
Query: 554 ALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRG 375
ALL N +EG+PGKVI+V AK RTG N +T +RETL+ HYG+K +G+GG F+++ G+
Sbjct: 155 ALLANLFASEGQPGKVIEVKAKRRTGPLNLVTCMRETLEKHYGNKPIGMGGTFIIQKGKV 214
Query: 374 YFHVMP-DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXX 198
H+MP +FS PL SD V+ WLH++E+ AP LR++
Sbjct: 215 KSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLE----HTHFF 270
Query: 197 XXXXXXXXXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 63
YDTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 271 SRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 315
>BC012298-1|AAH12298.1| 265|Homo sapiens chromosome 11 open reading
frame 54 protein.
Length = 265
Score = 61.3 bits (142), Expect = 4e-09
Identities = 35/98 (35%), Positives = 45/98 (45%)
Frame = -1
Query: 356 DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXXXXXXXXX 177
+FS PL SD V+ WLH++E+ AP LR++
Sbjct: 172 EFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYHY 231
Query: 176 XXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 63
DTTP+ V Y GYF A L R+D P ETH+ GRD
Sbjct: 232 ----DTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 265
>AF079564-1|AAC28392.1| 353|Homo sapiens ubiquitin-specific
protease UBP41 protein.
Length = 353
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 443 LKTHYGDKVVGLGGAFVLRAGRGYFHVMPDFSRAPLCSDAA--VDSWLHYFELDAP 282
+ H G + G A+ G G +H D S P+ S D++LH++EL +P
Sbjct: 294 VSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLHFYELASP 349
>AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein.
Length = 2248
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 398 FVLRAGRGYFHVMPDFSRAPLCSDAAVDSWL 306
+ L A RG FH++ F +PLC +AA +W+
Sbjct: 1779 YELCARRGIFHIILSFFHSPLCDEAA-QNWI 1808
>AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein.
Length = 2046
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 398 FVLRAGRGYFHVMPDFSRAPLCSDAAVDSWL 306
+ L A RG FH++ F +PLC +AA +W+
Sbjct: 1577 YELCARRGIFHIILSFFHSPLCDEAA-QNWI 1606
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,300,221
Number of Sequences: 237096
Number of extensions: 1968668
Number of successful extensions: 6317
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6314
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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