Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c13f
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.47 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 376  TPNWSRSGARRT*CRRSNATRYTTWPSC--WNT*TATPPSSPALEPD 510
            +P W+ +  RRT   R   T  TT P+   W T   T P    + P+
Sbjct: 1049 SPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPE 1095



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 180  QSRSPKLPSVPTPRNQTLTIN*VTFCHLFLLCNIAVFIRKVCVN 49
            + + P LP+   P    L +   T C  + LCN      +VC N
Sbjct: 2224 EPQEPVLPAEVVPCQGRLFVADDTNCAQYYLCNQGQLQLQVCPN 2267


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 309 SVADSPDLTEPPYYLKSPGLTGDAXLVEIGGPPYLVPQVKRDKI 440
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 707 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 750


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 309 SVADSPDLTEPPYYLKSPGLTGDAXLVEIGGPPYLVPQVKRDKI 440
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 599 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 642


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 442  YILSRLTCGTKY 407
            Y L +L CGT+Y
Sbjct: 1452 YTLEKLLCGTRY 1463


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,861
Number of Sequences: 336
Number of extensions: 2939
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)