Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c13f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    27   1.5  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   3.5  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    25   6.1  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   6.1  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   8.1  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   8.1  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 168 PKLPSVPTPRN--QTLTIN*VTFCHLFLLCNIAVFIRK 61
           P LP+   P+N  Q L +  +   H FL  N A+F+RK
Sbjct: 82  PSLPAYLQPKNRLQFLFLGPLKVLHQFLALNWALFVRK 119


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 514 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGG 401
           HGP  + A       +    L  S +   LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 336 EPPYYLK--SPGLTGDAXLVEIGGPPYLVPQV 425
           EP  YLK  S  +TG +  +++G   +L P++
Sbjct: 261 EPDRYLKYASESITGHSTTIDVGFERFLAPEI 292


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 411 LVPQVKRDKIYDLAKLLEHLNR 476
           LVP  K  K Y L  L +HLNR
Sbjct: 260 LVPNEKNPKEYILKLLFDHLNR 281


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 577 STVPLRTLRFTIPSQFTPRYGHGP 506
           S V L  ++FT PSQ    YG GP
Sbjct: 482 SFVNLNLIQFTSPSQALFDYGEGP 505


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 535 QFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGGPPISTS 383
           +F   YGH P  +P+R   S    S+ +     LSR    ++    P+S S
Sbjct: 278 KFAEVYGHSPPASPSRTPASPKSDSALMDEDSDLSRRHSLSEQSLSPVSES 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,803
Number of Sequences: 5004
Number of extensions: 45269
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)