Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c13f
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270...    30   1.5  
11_01_0247 - 1892248-1892602,1892835-1893112,1893371-1893392,189...    29   2.7  
12_01_0462 - 3629190-3629425,3629765-3630122,3630573-3630796,363...    29   3.6  
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708     28   6.2  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    28   6.2  
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271...    27   8.2  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           27   8.2  
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97...    27   8.2  

>04_04_1093 +
           30825722-30826168,30826457-30826608,30826926-30827048,
           30827240-30827384,30828032-30828093,30828373-30828586,
           30829671-30830585,30830827-30831076,30831164-30831432
          Length = 858

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 227 GTIYSSVGRSSLCIVEWFNNELQV 298
           G +YSSVG+ S+ +  W + +LQ+
Sbjct: 407 GFVYSSVGKDSILVTAWGSGQLQI 430


>11_01_0247 -
           1892248-1892602,1892835-1893112,1893371-1893392,
           1894613-1895268
          Length = 436

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 276 HSTIHKLLRPTEEYIVPSPXXXXXXXXLTSFLQSRSPKLPSVPTPR 139
           +ST+H   R T+E +  SP           F   R P L S+P+PR
Sbjct: 95  YSTLH---RGTDELVAHSPHQLVPFLESQVFANDRIPDLSSLPSPR 137


>12_01_0462 -
           3629190-3629425,3629765-3630122,3630573-3630796,
           3631375-3631552
          Length = 331

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 219 KEKELYTPPLDEVACVLSNGLTTNFKFVEVSVADSPDLTEPPYYL 353
           +E+E  TP  + + C   N  T   KF + S   + D   PPYYL
Sbjct: 33  EEEEDCTPLPNGLICSRQNWETMYGKFADASPMRNTDRPVPPYYL 77


>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
          Length = 567

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = -1

Query: 565 LRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGGPPIST 386
           L TL  ++PS   P+ G G A     +  S  +        YIL+  T GTK   P IST
Sbjct: 80  LLTLAVSVPSLKPPKCGAGTADPGCSEKASSLQLGVFFLALYILAVGTGGTK---PNIST 136

Query: 385 SXA 377
             A
Sbjct: 137 IGA 139


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/60 (33%), Positives = 23/60 (38%)
 Frame = -1

Query: 538 SQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGGPPISTSXASPVNPG 359
           S  TP  G G  P P+    S    SS        +   CGT    PP  +S  SP  PG
Sbjct: 269 SPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGT----PPAPSSGTSPTTPG 324


>07_03_1774 +
           29425486-29425831,29426018-29426235,29426337-29427131,
           29427206-29428074,29428317-29428749,29429263-29429859
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 568 PLRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSL 452
           P+  L F    +F   YG  PAP   + A S  KC++ +
Sbjct: 359 PVLHLAFQALDKFKKEYGRYPAPGCEQDAQSFLKCAADI 397


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 421 CGTKYGGPPISTSXASPVNPGD 356
           C  ++GGPP  +S A PV  G+
Sbjct: 200 CQVRWGGPPSKSSIADPVLTGE 221


>06_01_0125 +
           970746-970967,971126-971226,971897-972026,972108-972333,
           972400-972502,972519-972594,972710-973333
          Length = 493

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 237 TPPLDEVAC--VLSNGLTTNFKFVEVSVADSPDLTEPP 344
           T P   + C  +L N    N KF+E++ + SPD  EPP
Sbjct: 297 TEPFTFMHCWKLLHNEAKWNNKFLELNNSTSPDRMEPP 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,996
Number of Sequences: 37544
Number of extensions: 311809
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)