Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c13f
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...    57   1e-08
Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/104 (27%), Positives = 49/104 (47%)
 Frame = +3

Query: 264 VLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLTGDAXLVEIGGPPYLVPQVKRDKIY 443
           V    L +NF+ VEV++ D PDL++PP+  KS G   +  + E+GGP  L P    D  +
Sbjct: 1   VFQTSLLSNFENVEVNIVDCPDLSKPPFNQKSSGFGHNLRIAEVGGPGNLYPGFHIDHQF 60

Query: 444 DLAKLLEHLNRDXXXXXXXXXXXXXXXXVNCXGIVNLSVRNGTV 575
           D+ K+ +                      NC  + +++++ G V
Sbjct: 61  DIPKIGKVCEHPEAAVFGPGAGPWPIVGQNCEMVADVNLKTGEV 104


>Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +2

Query: 182 KNDVNRLH*SNNQGEGTIYSSVGRSSLCIVEWFNNELQVCGSVSGR*SR 328
           +ND N  + SNN GE  +Y +V + S+ +VE+    L++  S + R SR
Sbjct: 405 ENDDNVFNVSNNFGETPLYVAVLQRSIEVVEYL---LELGASPNSRSSR 450


>AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +2

Query: 182 KNDVNRLH*SNNQGEGTIYSSVGRSSLCIVEWFNNELQVCGSVSGR*SR 328
           +ND N  + SNN GE  +Y +V + S+ +VE+    L++  S + R SR
Sbjct: 405 ENDDNVFNVSNNFGETPLYVAVLQRSIEVVEYL---LELGASPNSRSSR 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,753,960
Number of Sequences: 27780
Number of extensions: 268333
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)