Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c11r
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    33   0.053
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    27   3.5  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    27   3.5  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    27   3.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.1  

>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 32.7 bits (71), Expect = 0.053
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 426 KVEDXXXXXXXXXXXLNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQDILQ 253
           KVE+           +N++RPHQ+RE+L +++E Q +         + H  ++ + L+
Sbjct: 256 KVENIRVLLLNLHHLINDYRPHQSRESLIMLLEKQLKHEESQVELLRTHNRQMTETLE 313


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 168 YFPFGPTIHLAL*NLIPIHFDLVSFGEHSVKYP 266
           + P+GPT+  +L N++  H D+ + G  S  YP
Sbjct: 154 HLPYGPTLSFSLHNVVLRH-DIPNTGTMSEAYP 185


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 153 EYCKYYFPFGPTIHLAL*NLIPIHFDL 233
           E CK+ F F P  H  L N+ PI   L
Sbjct: 157 EQCKFSFLFAPMCHPTLKNVAPIRKQL 183


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 267 QDILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQKADPCFELDRIMCNVVDNMR* 88
           +D+LQ  +  +  +  L S     N  LD+  N+  N   A P ++  R  CNV      
Sbjct: 52  KDLLQRRVLPISVRRILSSRKTFVN-YLDETPNSRYNTCVAKPSYKPPRKFCNVCGYWGK 110

Query: 87  YLCE 76
           Y C+
Sbjct: 111 YACQ 114


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -1

Query: 282  HLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQKADPCFELDR 121
            HLD++ + LQ+ LQ+LP +  +   +++   L++  EN+         C+ + R
Sbjct: 2280 HLDELNNSLQHYLQNLPCKKFIPVFYQLAARLMN--ENSKFQQSLTSICYNVGR 2331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,420
Number of Sequences: 5004
Number of extensions: 53842
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)