Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c11r
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091...    59   4e-09
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744...    31   0.90 
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    30   2.1  
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316...    29   4.8  
12_01_0686 - 5855216-5858263                                           28   6.4  
12_01_0708 - 6137865-6140909                                           28   8.4  

>04_04_1467 -
           33808507-33808588,33808869-33808942,33809028-33809194,
           33809392-33809461,33809544-33809681
          Length = 176

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
 Frame = -1

Query: 696 YKFYTDEXXXXXXXXXXXXPIHDSYSMFGNSFNADDAIIRSLESQGFRRLYPMH--FERR 523
           Y+ Y D             P+   Y +FG ++  D  ++ SLE QG R+LYP     + +
Sbjct: 14  YRLYKDYEKDPSSAPEPPPPVDGPYQLFGATYTTD-VVLPSLEDQGVRQLYPKSPDIDFK 72

Query: 522 RELKKXXXXXXXXXXXXXXXLVHCPDSPKRAEKVEDXXXXXXXXXXXLNEFRPHQARETL 343
           +EL+                LV  P   + A +VED           LN  RPHQAR TL
Sbjct: 73  KELRTLNRELQLHILELADILVERPS--QYARRVEDISLIFKNLHHLLNSLRPHQARATL 130

Query: 342 RVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNE 220
             M+E Q ++R +     K+  ++ Q +L  +L  L D N+
Sbjct: 131 IHMLENQIQRRKQAIEDIKQRREEAQKLLGESLLIL-DGNQ 170


>05_04_0209 -
           19073147-19074041,19074117-19074163,19074258-19074437,
           19074839-19074955,19075105-19075227,19075391-19075776,
           19076177-19076303,19077140-19077202,19078035-19078086,
           19078189-19080023
          Length = 1274

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 345 LRVMMELQKRQRVETAARFKKHLDKVQD-ILQNALQSLPDQNELESN 208
           L V  +L     VE    +K  +D   D I+ N L S+PD N+  +N
Sbjct: 645 LEVFPQLNFLTLVEVCMEYKNDIDGAADYIIHNVLPSIPDNNDAHAN 691


>11_01_0374 -
           2843405-2843508,2844134-2844239,2844327-2844409,
           2844886-2845078,2845527-2845662,2846185-2846264,
           2846348-2846932,2847058-2847126,2847203-2847347,
           2847442-2847542,2848208-2849066,2849397-2849536,
           2849606-2849783,2849885-2850287,2850770-2850833,
           2851223-2851278,2851470-2851572
          Length = 1134

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
 Frame = -1

Query: 372 FRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNELESNFKVPN 193
           FR +Q++  + VM  L   +R E   R K+HL   Q++    L S       E  +KV  
Sbjct: 222 FRKNQSQIGVDVMGTLSSEERDE---RLKQHLIVSQELHPALLSS-------EHEYKVFQ 271

Query: 192 ELLDQMENNTCNIQKADP----CFELDRIMCNVVDNMR*YLCELWLTAKIHYSINNSNT 28
           +++  +       Q A      CF  + + C V+  +  +   +++   I Y +NN NT
Sbjct: 272 DIVGGIMALVLRPQDAQSPLVRCFSRELLTCLVLQPVMNFASPIYMNELIIYLMNNKNT 330


>08_01_0360 -
           3160723-3160821,3160911-3160995,3161099-3161205,
           3163066-3163155,3163265-3163408,3163572-3163622,
           3163735-3163844,3163928-3164123
          Length = 293

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 132 QSRDQPFEYCKYYFPFGPTIHLAL*NLIPIH--FDLVSFGEHSVKYP 266
           + R QP      + PFGPT +  L N++  H   D  + G+ S  YP
Sbjct: 141 EHRGQPDGLIVCHLPFGPTAYFGLLNVVTRHDIKDRKAMGKMSEAYP 187


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 210 LIPIHFDLVSFGEHSVKYPVPCLSVS*ILLQFQPSVFSAIP 332
           L+P+H + +    +S++ P+P        L +  + FS+IP
Sbjct: 580 LLPLHIEFLDLSFNSIEGPIPIPQEGSSTLDYSSNQFSSIP 620


>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 210 LIPIHFDLVSFGEHSVKYPVPCLSVS*ILLQFQPSVFSAIPSLLSMFL 353
           L+P+  D      +S++ P+P       +L +  + FS++P   S +L
Sbjct: 581 LLPLEIDFFDLSFNSIEGPIPVPQEGSTMLDYSSNQFSSMPLHYSTYL 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,078
Number of Sequences: 37544
Number of extensions: 284203
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)