Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c11r
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032653-5|CAC42382.1| 251|Caenorhabditis elegans Hypothetical ... 64 7e-11
AL032653-4|CAA21715.1| 253|Caenorhabditis elegans Hypothetical ... 64 7e-11
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 34 0.087
Z75533-6|CAA99819.1| 378|Caenorhabditis elegans Hypothetical pr... 30 1.9
U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in ge... 29 3.3
Z83246-2|CAB05841.1| 292|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z78015-5|CAB01432.2| 258|Caenorhabditis elegans Hypothetical pr... 28 5.7
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p... 28 5.7
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 28 7.6
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 28 7.6
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 28 7.6
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 28 7.6
>AL032653-5|CAC42382.1| 251|Caenorhabditis elegans Hypothetical
protein Y54E5B.3b protein.
Length = 251
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/130 (26%), Positives = 61/130 (46%)
Frame = -1
Query: 624 YSMFGNSFNADDAIIRSLESQGFRRLYPMHFERRRELKKXXXXXXXXXXXXXXXLVHCPD 445
+ ++G + +D +I L++ G LY + E+KK L+ PD
Sbjct: 43 FKVYGEEYRLEDDVIAPLKNAGVAELYKNKNNWKTEMKKLNRSAIVAFFDLVEILIRAPD 102
Query: 444 SPKRAEKVEDXXXXXXXXXXXLNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQ 265
P R EK+ D +NEFRP QAR+++R++ E Q + + FKK+L +
Sbjct: 103 HPMREEKMVDLHTIFINMHHLINEFRPVQARDSVRILQERQIEELSDICKDFKKYLRDGR 162
Query: 264 DILQNALQSL 235
+++ + Q +
Sbjct: 163 EVVDDQFQMI 172
>AL032653-4|CAA21715.1| 253|Caenorhabditis elegans Hypothetical
protein Y54E5B.3a protein.
Length = 253
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/130 (26%), Positives = 61/130 (46%)
Frame = -1
Query: 624 YSMFGNSFNADDAIIRSLESQGFRRLYPMHFERRRELKKXXXXXXXXXXXXXXXLVHCPD 445
+ ++G + +D +I L++ G LY + E+KK L+ PD
Sbjct: 45 FKVYGEEYRLEDDVIAPLKNAGVAELYKNKNNWKTEMKKLNRSAIVAFFDLVEILIRAPD 104
Query: 444 SPKRAEKVEDXXXXXXXXXXXLNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQ 265
P R EK+ D +NEFRP QAR+++R++ E Q + + FKK+L +
Sbjct: 105 HPMREEKMVDLHTIFINMHHLINEFRPVQARDSVRILQERQIEELSDICKDFKKYLRDGR 164
Query: 264 DILQNALQSL 235
+++ + Q +
Sbjct: 165 EVVDDQFQMI 174
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 34.3 bits (75), Expect = 0.087
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = -1
Query: 375 EFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNELESNFKVP 196
E R Q E+ + M+ K+ + A R KKH ++ + L L Q N +
Sbjct: 58 ELRIEQEVESAKKYMKTNKKMAL-AALRKKKHYEQELSRIDGVLTKLEAQRTALENVGMH 116
Query: 195 NELLDQMENNTCNIQKADPCFELDRI 118
NE++D + T ++K ++D++
Sbjct: 117 NEVIDVLGKTTETLKKEHAKMDIDKV 142
>Z75533-6|CAA99819.1| 378|Caenorhabditis elegans Hypothetical
protein C54G4.7 protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 291 FKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNT 163
F++H V D+L++ + S+ QN + K PN+ +EN T
Sbjct: 129 FRRHYLLVDDMLKDGVGSILIQNPFYGDRKPPNQFRSSLENVT 171
>U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in germ
line developmentprotein 3, isoform a protein.
Length = 977
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 606 SFNADDAIIRSLESQGFRRLYPMHFER 526
S N DD + S+ QG+ R YP +R
Sbjct: 667 SVNGDDQNVESMHDQGYERQYPRQHQR 693
>Z83246-2|CAB05841.1| 292|Caenorhabditis elegans Hypothetical
protein ZK795.3 protein.
Length = 292
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 132 QSRDQPFEYCKYYFPFGPTIHLAL*NLIPIHFDLVSFGEHSVKYP 266
++R P + PFGPT ++ N++ H D+ + G S +YP
Sbjct: 136 ETRGNPDGMLVCHLPFGPTAFFSMANVVMRH-DIPNCGTMSEQYP 179
>Z78015-5|CAB01432.2| 258|Caenorhabditis elegans Hypothetical
protein R02D5.3 protein.
Length = 258
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 624 YSMFGNSFNADDAIIRSLESQG 559
YS G++ DD+IIRS+ QG
Sbjct: 156 YSSIGSAIRIDDSIIRSISEQG 177
>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
protein ZK328.7b protein.
Length = 1098
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -1
Query: 327 LQKRQRVETAARFKKHLDKVQDILQNALQSLP 232
L K+ + ++ F++H++ + ++L+N LQS P
Sbjct: 424 LAKQSKDKSFENFRQHIENLVEMLRNQLQSFP 455
>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
protein ZK328.7a protein.
Length = 1332
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -1
Query: 327 LQKRQRVETAARFKKHLDKVQDILQNALQSLP 232
L K+ + ++ F++H++ + ++L+N LQS P
Sbjct: 424 LAKQSKDKSFENFRQHIENLVEMLRNQLQSFP 455
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 294 RFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCN 157
RFK+ ++ + ILQN+ Q D+ + + P L D + C+
Sbjct: 743 RFKRLVEHLSAILQNSTQQRADRQQQAALMVRPRRLSDSSVGSACS 788
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 294 RFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCN 157
RFK+ ++ + ILQN+ Q D+ + + P L D + C+
Sbjct: 743 RFKRLVEHLSAILQNSTQQRADRQQQAALMVRPRRLSDSSVGSACS 788
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 263 IFYRMLSKAYQIKMNWNQISKCQMN-----CWTKWKIILAIFKRLIPAL 132
IFY +L +WN C + C+T ++LA+FKR +PAL
Sbjct: 366 IFYSVLLGKASSYFDWNTTIACYVAILIGLCFTL--VLLAVFKRALPAL 412
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 263 IFYRMLSKAYQIKMNWNQISKCQMN-----CWTKWKIILAIFKRLIPAL 132
IFY +L +WN C + C+T ++LA+FKR +PAL
Sbjct: 366 IFYSVLLGKASSYFDWNTTIACYVAILIGLCFTL--VLLAVFKRALPAL 412
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 294 RFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCN 157
RFK+ ++ + ILQN+ Q D+ + + P L D + C+
Sbjct: 743 RFKRLVEHLSAILQNSTQQRADRQQQAALMVRPRRLSDSSVGSACS 788
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 263 IFYRMLSKAYQIKMNWNQISKCQMN-----CWTKWKIILAIFKRLIPAL 132
IFY +L +WN C + C+T ++LA+FKR +PAL
Sbjct: 366 IFYSVLLGKASSYFDWNTTIACYVAILIGLCFTL--VLLAVFKRALPAL 412
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,171
Number of Sequences: 27780
Number of extensions: 286820
Number of successful extensions: 779
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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