Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c11r
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.13 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.2  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   5.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 158 LQVLFSIWSNNSFGTLKFDSNSF*SGKLWRAFCKISCTLSKCFLNLAAVSTLC 316
           + +L+ I  N SFGT+  D        LW +F  +SCT S   L + +V   C
Sbjct: 97  MALLYEISGNWSFGTIMCD--------LWVSFDVLSCTASILNLCMISVDRFC 141


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 288 KKHLDKVQDILQNA-LQSLPDQNELESNFKVPNELLDQMENNTCNIQKA 145
           K  +D +Q  LQ   + SL D N+      +P    +  ENNTC+I  +
Sbjct: 133 KDFIDFIQKNLQCCGVHSLSDYNDKP----IPASCCNSPENNTCSISNS 177


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 569 KARDFEDCILCILNEEEN*RN 507
           K RD  +  + ++NEEEN RN
Sbjct: 47  KLRDSSEARIKLINEEENFRN 67


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +3

Query: 75  IHINTISYYQLHCT*FYLIQSRDQP 149
           I++NT+  +++ CT  +L+   + P
Sbjct: 689 IYLNTMESHEVRCTAVFLLMKTNPP 713


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 273 KVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCN 157
           K +  +Q  L  + D+   +   K   ELL ++ NN CN
Sbjct: 28  KDRPYVQKQLHCILDRGHCDVIGKKIKELLPEVLNNHCN 66


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 340 SNDGIAEKTEG*NCSKIQETLRQGTGYFTEC 248
           S D    K EG   S++Q ++   TG+  EC
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVASTTGFSKEC 91



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 346 IESNDGIAEKTEG*NCSKIQ 287
           I SN+ IA+ T+  NC  +Q
Sbjct: 21  IYSNETIAQVTDDENCETLQ 40


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 340 SNDGIAEKTEG*NCSKIQETLRQGTGYFTEC 248
           S D    K EG   S++Q ++   TG+  EC
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVASTTGFSKEC 91



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 346 IESNDGIAEKTEG*NCSKIQ 287
           I SN+ IA+ T+  NC  +Q
Sbjct: 21  IYSNETIAQVTDDENCETLQ 40


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 485 IFWICWICLFIVQI 444
           +F ICW+  F+V +
Sbjct: 343 VFIICWLPFFVVNL 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,407
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)