Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c11f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    30   0.31 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   1.6  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   2.2  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   8.8  

>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 179 RTDSRFTMSETAQVSSLPLPPMQYINFYTDENVRRNRAPLPPRP 310
           R +  ++   +  +SSL +P  ++++   D N++R+ +PL   P
Sbjct: 194 RNNHHYSRKSSPHISSLAVPSTKHLDGERDRNLKRSTSPLSSSP 237


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +2

Query: 182  TDSRFTMSETAQVSSLPLPPMQYI---NFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNA 352
            TDSR     T+   S P PP   +     +  +    ++ P P   IH S S F    + 
Sbjct: 1228 TDSRLVTKPTSTFPSPPSPPSSSVWNKREHHPKPFSLHQVPPPESLIHKSKSKFSKGNHH 1287

Query: 353  DDAIIRSLESQGFRRLYPMHFERRRELKK 439
                 +S+  +G +R  P+   R +EL +
Sbjct: 1288 STNGTQSIRGRGGKRGKPL---RSKELNR 1313


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 521 KVEDXXXXXXXXXXXXNEFRPHQARETLRVMM 616
           KVE+            N++RPHQ+RE+L +++
Sbjct: 256 KVENIRVLLLNLHHLINDYRPHQSRESLIMLL 287


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 483 KSNKSRKFAS-SEWLSFFNSLLRSKCIGYNLRNPWLSNERIIASS 352
           KSN   K     E+ +F+   +  + + +N +NP  S ER++  S
Sbjct: 481 KSNLEAKSNDVEEYDAFYKDEINCEVLSWNEQNPKASEERVVGYS 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,842
Number of Sequences: 5004
Number of extensions: 41529
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)