Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c11f
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091...    65   5e-11
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941...    30   1.7  
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907...    28   6.8  
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574           27   9.0  

>04_04_1467 -
           33808507-33808588,33808869-33808942,33809028-33809194,
           33809392-33809461,33809544-33809681
          Length = 176

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
 Frame = +2

Query: 221 SSLPLPPMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIRSLESQGFRRL 400
           SS   PP  Y   Y D     + AP PP P+   Y +FG ++   D ++ SLE QG R+L
Sbjct: 4   SSAYPPPPPYYRLYKDYEKDPSSAPEPPPPVDGPYQLFGATYTT-DVVLPSLEDQGVRQL 62

Query: 401 YPM--HFERRRELKKXXXXXXXXXXXXXXXXVHCPDSPKRAEKVEDXXXXXXXXXXXXNE 574
           YP     + ++EL+                 V  P   + A +VED            N 
Sbjct: 63  YPKSPDIDFKKELRTLNRELQLHILELADILVERPS--QYARRVEDISLIFKNLHHLLNS 120

Query: 575 FRPHQARETLRVMM 616
            RPHQAR TL  M+
Sbjct: 121 LRPHQARATLIHML 134


>03_05_1042 -
           29893649-29893721,29893960-29894033,29894111-29894179,
           29894333-29894438,29894548-29894664,29895412-29895527,
           29895612-29895698,29897281-29897309,29897914-29898169
          Length = 308

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 230 PLPPMQYINFYTDENV--RRNRAPLPPRPIHDSYSMFGNSFNADDAII 367
           P+PP +   F+T   +   R R  LP RP   S  +FG   N   A++
Sbjct: 53  PVPPQKVAPFFTPSKIFFHRVRLVLPFRPFGSSVPIFGEFENRVQAVL 100


>02_05_0515 +
           29689259-29689535,29689867-29690209,29690475-29690746,
           29691282-29691478,29691874-29692237,29692831-29692898
          Length = 506

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 PPRPIHDSYSMFGNSFNADDAI 364
           PP  +H  YS FG SF   DA+
Sbjct: 65  PPSRVHPHYSGFGFSFTVTDAV 86


>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
          Length = 602

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 221 SSLPLPPMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIR 370
           S + LPP    + Y         A LPP  I+ S  + GNSF+++  +++
Sbjct: 170 SYIVLPPAA-ASIYKTSTSEGGGAQLPPPSINSSSLLTGNSFHSNVTVLK 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,978,557
Number of Sequences: 37544
Number of extensions: 218953
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)