Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c11f
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032653-5|CAC42382.1|  251|Caenorhabditis elegans Hypothetical ...    75   3e-14
AL032653-4|CAA21715.1|  253|Caenorhabditis elegans Hypothetical ...    71   9e-13
Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    29   2.7  
Z78015-5|CAB01432.2|  258|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AL032653-5|CAC42382.1|  251|Caenorhabditis elegans Hypothetical
           protein Y54E5B.3b protein.
          Length = 251

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 39/132 (29%), Positives = 62/132 (46%)
 Frame = +2

Query: 218 VSSLPLPPMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIRSLESQGFRR 397
           VS  P PP +Y + YT + +    AP PP P+ + + ++G  +  +D +I  L++ G   
Sbjct: 10  VSPFPNPP-EYASAYTSDRINNGSAPPPPHPLTE-FKVYGEEYRLEDDVIAPLKNAGVAE 67

Query: 398 LYPMHFERRRELKKXXXXXXXXXXXXXXXXVHCPDSPKRAEKVEDXXXXXXXXXXXXNEF 577
           LY      + E+KK                +  PD P R EK+ D            NEF
Sbjct: 68  LYKNKNNWKTEMKKLNRSAIVAFFDLVEILIRAPDHPMREEKMVDLHTIFINMHHLINEF 127

Query: 578 RPHQARETLRVM 613
           RP QAR+++R++
Sbjct: 128 RPVQARDSVRIL 139


>AL032653-4|CAA21715.1|  253|Caenorhabditis elegans Hypothetical
           protein Y54E5B.3a protein.
          Length = 253

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
 Frame = +2

Query: 218 VSSLPLPPMQYINFYTDENVRRNR--APLPPRPIHDSYSMFGNSFNADDAIIRSLESQGF 391
           VS  P PP +Y + YT + +  +   AP PP P+ + + ++G  +  +D +I  L++ G 
Sbjct: 10  VSPFPNPP-EYASAYTSDRINNDSGSAPPPPHPLTE-FKVYGEEYRLEDDVIAPLKNAGV 67

Query: 392 RRLYPMHFERRRELKKXXXXXXXXXXXXXXXXVHCPDSPKRAEKVEDXXXXXXXXXXXXN 571
             LY      + E+KK                +  PD P R EK+ D            N
Sbjct: 68  AELYKNKNNWKTEMKKLNRSAIVAFFDLVEILIRAPDHPMREEKMVDLHTIFINMHHLIN 127

Query: 572 EFRPHQARETLRVM 613
           EFRP QAR+++R++
Sbjct: 128 EFRPVQARDSVRIL 141


>Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical
           protein R03G8.6 protein.
          Length = 747

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +2

Query: 239 PMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIRSLESQGFRRLYPMHF 415
           PM+ ++F + +N +          IH++YS+ G+  +  + +I  +  Q F  L  M +
Sbjct: 285 PMEKLDFVSVQNFKFGAMENWGLVIHNAYSLIGDPMDVTEIVIHEIAHQWFGNLVTMKY 343


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 341 SFNADDAIIRSLESQGFRRLYPMHFER 421
           S N DD  + S+  QG+ R YP   +R
Sbjct: 667 SVNGDDQNVESMHDQGYERQYPRQHQR 693


>Z78015-5|CAB01432.2|  258|Caenorhabditis elegans Hypothetical
           protein R02D5.3 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 323 YSMFGNSFNADDAIIRSLESQG 388
           YS  G++   DD+IIRS+  QG
Sbjct: 156 YSSIGSAIRIDDSIIRSISEQG 177


>U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical
           protein T23H2.4 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 200 MSETAQVSSLPLPPMQYINFYTDENVRRNRAPLPPRPI 313
           +S T+ +S  P+PP   I+F +DE      +P+   PI
Sbjct: 396 ISTTSPISLFPIPPTPSISFNSDEKPSSLASPVGILPI 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,688
Number of Sequences: 27780
Number of extensions: 227258
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)