Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c09f
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                    199   2e-51
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   1.9  
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)                  28   5.7  
SB_57317| Best HMM Match : SSF (HMM E-Value=0)                         28   7.5  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   28   7.5  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score =  199 bits (485), Expect = 2e-51
 Identities = 87/177 (49%), Positives = 125/177 (70%)
 Frame = +3

Query: 105 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 284
           P  Y DLGK+A DVF KGY FG  K+DLKT +++GVEF +  +S  ++GKVFGSL +K+ 
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYK 159

Query: 285 VEDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 464
             DYG++ +EKW TDN L+++IT++D+IA GLK+  + TFAP TG K+ K+KT++  D +
Sbjct: 160 YSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQDYL 219

Query: 465 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFAL 635
               ++D D AGP V  +AV+ Y+GW AG    +DT K+K   NNF+LGY++ DF +
Sbjct: 220 HATGDVDFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQI 276


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 321 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 470
           +TD N L +D + +DK     K   E T    +   TGKL+T +  DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859


>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +3

Query: 222 SGITSNQESGKVFGSLSSKFAVEDYGLTFTEKWNTDNTLATDITIQDK 365
           SG+   +ESG+   SL+   A +   L  T+  NTD T  TD T Q+K
Sbjct: 65  SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111


>SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)
          Length = 291

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 471 NTNLDLDLAGPVVDVAAVLNYQG--WLAGVHTQFDTQKAKFSKNNF 602
           N  L +DL   V  V  VL +    WL   +T F+T+K K +KN+F
Sbjct: 95  NLQLYIDLGLKVTKVYRVLEFDQSPWLKQ-YTNFNTEKRKNAKNSF 139


>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 260 KNLSAFLVGGDSAGEFNTRLALG 192
           KNLS +++GG S G F T L+ G
Sbjct: 48  KNLSDYILGGRSLGSFVTALSAG 70


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 402 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 539
           +AP    K  +L T F +DT AVN N    ++      +  +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 444 SFTNDTVAVNTNLDLDLAGPVVDVAAVLN 530
           ++TN   A++T     +AGPVV V+A LN
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLN 241


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 327  DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 476
            ++TLA +ITI  +  +A G  +  E TFAP+T TK  +   +    T    T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 367  ILSWIVMSVANVLSVFHFSVKVKP*SSTANLEERLPKTFPLSWLEVIPLVNSTPDSLL 194
            + ++   S ANVL V+  SV +KP      LEE       L W +     ++TP++++
Sbjct: 871  LCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---ASTTPETVI 925


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 333  TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLD 485
            T  T +  +  +AAG  V  +GTFAP T       +++F   T   + N+D
Sbjct: 1652 TPITSVANESTVAAGTTVLPDGTFAPGTNVAG---ESTFAPVTSVASENID 1699


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = -1

Query: 589  ENFAFCVSNWVCTPASQPW*FS---TAATSTTGPAKSRSKLVFTATVSLV-NEVFNFPVL 422
            +N   C+ +W+  P +Q W      + A S   P    S  VFT  + +  N+      L
Sbjct: 1006 DNQTCCIHSWLPVPDNQTWCIHSLYSLAPSNRLPNLLYSLFVFTRRLQVPDNQTRGIHSL 1065

Query: 421  VPVCGAKVP-SRVTLRPAAILSWI 353
              + G+K P +++ +    I SW+
Sbjct: 1066 YSLVGSKYPITKLVVFTLCIHSWL 1089


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,605,366
Number of Sequences: 59808
Number of extensions: 417816
Number of successful extensions: 1135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)