Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c08f
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    29   0.60 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    29   0.60 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   4.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   7.4  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   9.8  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -1

Query: 395 RPGYSAEL-IVINVALEAISDNSNCQQMKRYIQDTRHQMQISDDETYSA*FDSTAHVS 225
           RP Y+  L I+ N  +E          M ++IQD    + + D   YS  F    H S
Sbjct: 252 RPAYAKTLEIIANKGIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADALHTS 309


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 288 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLV 419
           V+C     F    + +   GF    +  KF A+ WAV E +LLV
Sbjct: 145 VNCQSTTKFIFGELPVFNSGFSVSSSDVKFRAVQWAVGEAILLV 188


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 1   DSFVSYYANRFLVWWCR 51
           D F+SYY NR  V W R
Sbjct: 164 DQFISYYGNRVSVNWNR 180


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 168 GELRAVLSIGNVLTMVLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTD 344
           G  +AVLS  ++  +V    +MCC  +L  +    A L + S +  I   L  + + TD
Sbjct: 187 GPGKAVLSDDSICEIVETGLSMCCQSRLSQVLRYSAELSMTSILEKIFERLKYIDVKTD 245


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 219 HVTNMCCGIKLRTICFVIAYLHLV 290
           H +   C  +LR++C  +A+LH +
Sbjct: 467 HASCTYCVARLRSVCNFVAFLHQI 490


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 133 QSTIKLLLWVCVVNCV 180
           QST+ +L W+CV N V
Sbjct: 483 QSTVLILSWLCVENTV 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,121
Number of Sequences: 5004
Number of extensions: 52844
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)