Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c08f
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    31   0.61 
06_01_0076 - 622789-623689,623714-623931                               30   1.1  
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794...    29   1.9  
11_01_0804 - 7137525-7137824,7138207-7139043                           28   5.7  
08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006...    28   5.7  
07_01_1152 - 10837540-10839549                                         27   7.5  
02_05_0341 - 28115835-28116404                                         27   7.5  
11_01_0530 - 4164590-4165264,4165378-4165467,4167482-4168011,416...    27   10.0 
05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654     27   10.0 

>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
            8511209-8511523,8511576-8511682,8512559-8512629,
            8512952-8513029,8513390-8513454,8514224-8514274,
            8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 124  LYIQSTIKLLLWVCVVNCVQ-FFQLETFSQWFYTLLTCAVESNYALYV 264
            L  QS  +  L  CV N ++ FFQ+   SQW+Y L  C + S +  Y+
Sbjct: 1031 LSFQSKWRTYLRSCVRNNLRTFFQVLVQSQWWYNLEGCLLHSPHLKYL 1078


>06_01_0076 - 622789-623689,623714-623931
          Length = 372

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 387 PWAVVEP---LLLVLNLGTHGFYPFPGTFR 467
           PW V+     L+L L++G H  Y FPGTF+
Sbjct: 233 PWLVISGDMLLMLDLSVGIHHSYGFPGTFQ 262


>12_02_0580 +
           20776820-20777247,20777341-20778109,20779280-20779447,
           20779877-20780236
          Length = 574

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 217 RTIVRTFPIERTARNSPHTPTIIVLLLIVYT 125
           R  VR  P E T ++ PH PT+  L L V T
Sbjct: 394 RLTVRVLPAEDTVKDIPHLPTVTKLRLDVNT 424


>11_01_0804 - 7137525-7137824,7138207-7139043
          Length = 378

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = +3

Query: 195 GNVLTMVLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDK 374
           G++L  V  +T+   G          A+ H+   VLD+   ++  A V DG    V  D 
Sbjct: 208 GDLLRGVASLTDCAGGDGATARAIAAAFPHIKCTVLDLP-KVIDKAPVDDGVVNYVAGDM 266

Query: 375 FSAIPWAVVEPLLLVLN 425
           F A+P A    L LVL+
Sbjct: 267 FHAVPPAQAVLLKLVLH 283


>08_02_0306 -
           15599409-15599657,15600326-15600475,15600574-15600663,
           15600776-15601126,15601389-15601430,15601523-15601600
          Length = 319

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 213 VLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFHL-LTVAIVTDGFQCDVNYDKFSAIP 389
           ++HV      + L + C  + +L LV C LD   HL L+       FQC      F    
Sbjct: 106 LVHVNRESLEVMLHS-CHNLQWLSLVRCYLDGKLHLVLSHLRYIKIFQCKTTMAAFQDAV 164

Query: 390 WAVVEPLLLVLNLGTH 437
             +++ + +V NL  H
Sbjct: 165 ATLLKGIPIVRNLTLH 180


>07_01_1152 - 10837540-10839549
          Length = 669

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 387 PWAVVEPLLLVLNLGTHGFYPFPGTFRRQYNMYVEYTSI 503
           P  ++E     +NLG H FYP P  FR+  N  V+  S+
Sbjct: 51  PDGILELTNDTINLG-HAFYPTPQNFRKFSNSTVQSFSL 88


>02_05_0341 - 28115835-28116404
          Length = 189

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 524 IASGLCDNRCVLNIHIVLTPKCPREWVEAVG 432
           +A  LC   CVL + +V    C R W  A G
Sbjct: 26  LAGLLCALICVLGLGLVARCACTRRWARAAG 56


>11_01_0530 -
           4164590-4165264,4165378-4165467,4167482-4168011,
           4168094-4168603,4172207-4172432
          Length = 676

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 444 YPFPGTFRRQYNMYVEYTSIIA 509
           YPF GT+ R Y+++V  T+I+A
Sbjct: 645 YPFAGTYSRNYSVFV-VTNILA 665


>05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654
          Length = 381

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 VYTINNKTIIVGVCGELRAVLSIGNV 203
           V  +  + I+V  CG+ RAVLS G V
Sbjct: 209 VAVVGRRRIVVANCGDSRAVLSRGGV 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,045
Number of Sequences: 37544
Number of extensions: 334550
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)