Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c08f
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7) 31 0.63
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 30 1.4
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11) 29 1.9
SB_12104| Best HMM Match : DUF805 (HMM E-Value=0.67) 29 2.5
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 29 2.5
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08) 28 4.4
SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0) 28 5.8
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 28 5.8
>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
Length = 420
Score = 31.1 bits (67), Expect = 0.63
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 123 FVYTINNKTIIVGVCGELRAVLSIGNVLTMVLHVTNMCCGI-KLRTICFVIAYLHLVSCV 299
FVYT TII V R V SIG + H + KL I F++A L LVSC
Sbjct: 93 FVYT--GTTIIRHVQNSSRDVGSIGQRIDTEAHAHGGKTSLTKLVRITFLVAALGLVSCA 150
Query: 300 LDI 308
L I
Sbjct: 151 LQI 153
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 261 CFVIAYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLVLNLGTH 437
CFV A + SCV IA T + G +C+V+ D+ ++ P + + + N+G +
Sbjct: 877 CFVNACFNGGSCVDGIAEFKCTCPLGFSGSRCEVDVDECASSPCSALGTEKCINNIGAY 935
>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
Length = 332
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 288 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW 392
+ C L IA L+TVAI T C +NY FS W
Sbjct: 73 IICSLAIADLLVTVAIGTTEMLCTLNYCTFSCNWW 107
>SB_12104| Best HMM Match : DUF805 (HMM E-Value=0.67)
Length = 100
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 138 NNKTIIVGVCGELRAVLSIGNVLTMVLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFH 317
N TI + V + ++ NVLT+++ +TN ++ R+ F+++ L L ++ IA
Sbjct: 10 NTNTIAIAVFLGKGTLAAVANVLTLIVFITNRT--LRKRSAYFIVS-LALADALVGIAAI 66
Query: 318 LLTVAI 335
L V I
Sbjct: 67 CLAVFI 72
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = -1
Query: 212 HCENVSN*KNCTQFTTHTHNNSFIVDCIYKSKHTKI*LAKLFIFVNF*QEVCVVRHHHTR 33
HCE NCT+ T ++H+ + T I + + F+ ++ HH R
Sbjct: 660 HCEKCLFPSNCTRPTDNSHSGTLAAKHYKLRDTTIIVVCAILAFICIIAIAALIYRHHKR 719
Query: 32 NRF 24
+F
Sbjct: 720 QKF 722
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 230 HVLWNQITHYMFRHRLSAFGVLCLGYSVSFADSCYCH*WL 349
H++ N HY F L + ++ +G V SCY W+
Sbjct: 1103 HIVLNSRKHYFFLKVLMSLNMVIVGVGVLVTISCYLAIWI 1142
>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
Length = 363
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 138 NNKTIIVGVCGELRAVLSIGNVLTMVLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFH 317
N TI + V + ++ NVLT+++ +TN ++ R+ F IA L L ++ IA
Sbjct: 10 NTNTIAIAVFLGEGTLAAVANVLTLIVFITNRT--LRKRSAYF-IASLALADALVGIAAI 66
Query: 318 LLTVAI 335
L V I
Sbjct: 67 CLAVFI 72
>SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 138 NNKTIIVGVCGELRAVLSIGNVLTMVLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFH 317
N TI + V + ++ NVLT+++ +TN ++ R+ F IA L L ++ IA
Sbjct: 10 NTNTIAIAVFLGEGTLAAVANVLTLIVFITNRT--LRKRSAYF-IASLALADALVGIAAI 66
Query: 318 LLTVAI 335
L V I
Sbjct: 67 CLAVFI 72
>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 598
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 245 DSTAHVSNV*NHCENVSN*KNCTQFTTHTHNNSFIVDCIYKSKHT 111
DST + HC+ +S CT HT N +V C K+KHT
Sbjct: 68 DSTEAYTQGETHCDFLSV-VFCTLKAKHTCNFVSVVYCTLKTKHT 111
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 542 HVENTGIASGLCDNRCVLNIHIVLTPKCPREWVEAV 435
H+E + G C + N+H++ + KC EW + V
Sbjct: 455 HLERKPVKCGRC-TKWYRNVHLLKSHKCAPEWYQPV 489
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,334,184
Number of Sequences: 59808
Number of extensions: 425767
Number of successful extensions: 1002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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