Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c08f
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    30   0.96 
Z81575-3|CAB04629.2|  313|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL023856-3|CAA19562.2|  335|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    29   2.9  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    29   2.9  
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U97017-7|AAB52357.1|  130|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    27   6.8  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +3

Query: 177 RAVLSIGNVLTMVLHVTNMCC-----GIKLRTICFVIAYLHLVSCVLDIAFHLLTVAIV 338
           R VL + + +++ +HV  + C      I ++++ + +  +HL SC+LD+    LT   V
Sbjct: 19  RLVLHVISFISIPIHVFGVFCVFFKTPISMQSVKWSMMNVHLFSCLLDLGLSFLTTPFV 77


>Z81575-3|CAB04629.2|  313|Caenorhabditis elegans Hypothetical
           protein R08H2.3 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 246 KLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLVLN 425
           K+R + +++  LH V  +LDI    LT  +        VN+   S  P  +  PL L +N
Sbjct: 44  KMRHVKWILLLLHFVGALLDIFLSCLTTPV--------VNFPMISGYPLGLAVPLGLPIN 95

Query: 426 L 428
           +
Sbjct: 96  V 96


>Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical
           protein C34F6.11 protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 109 FVCFDLYIQSTIKLLLWVCVVNCVQFFQLETFSQWFYTLLTCAVESNYALYVS-SSLICI 285
           F C+ +YI     LL +V  V C   F L  +   FYT + C  E+   +++  ++LI  
Sbjct: 59  FFCYSVYINFIFALLAFVGGVLC---FTLGLYYSTFYTRINC--ENGINIWIPLNNLIAT 113

Query: 286 W 288
           W
Sbjct: 114 W 114


>AL023856-3|CAA19562.2|  335|Caenorhabditis elegans Hypothetical
           protein Y94A7B.6 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
 Frame = +3

Query: 183 VLSIGNVLTMVLHVTNMCCGI-----KLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTDG 347
           +L I +  ++ +H+   CC +      ++++ + +  LH  S  LD     L+++++   
Sbjct: 15  ILYITSAFSLPIHIFGGCCILCKTPTAMKSVKWALFNLHFWSASLD-----LSISLLAQP 69

Query: 348 FQCDVNYDKFSAIPWAVVEPLLLVLNLG 431
           F C   +  FS   W ++    +V +LG
Sbjct: 70  FMCTPAFAGFSLGIWGLIGVPTVVWSLG 97


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 66  GSLRCSTPPHEKPVRVITNE 7
           GSL+C+TPP  +  R+ TNE
Sbjct: 604 GSLKCATPPMNRLPRIPTNE 623


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 66  GSLRCSTPPHEKPVRVITNE 7
           GSL+C+TPP  +  R+ TNE
Sbjct: 610 GSLKCATPPMNRLPRIPTNE 629


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +3

Query: 174 LRAVLSIGNVLTMVLHVTNMCCGIKLR-TICFVIAYLHLVSCVLDI----AFHLLTVAIV 338
           L+A++ I  +   VL V  +     LR +  F++  LH V+C +D+     F + +  + 
Sbjct: 6   LKALMCIWGIFWNVLIVAAILKDRVLRNSSTFLLLSLHFVACTVDVGSRLVFDVPSEILN 65

Query: 339 TDGFQCDVNYDKF 377
              F+  VNYD F
Sbjct: 66  RPLFRLSVNYDDF 78


>Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical
           protein ZK228.7 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 246 KLRTICFVIAYLHLVSCVLDIAFHLLTVAIVT 341
           K++++   + ++HLVS  LD+ F  L   ++T
Sbjct: 44  KMQSVKAGLLFIHLVSATLDVFFSFLAAPVLT 75


>U97017-7|AAB52357.1|  130|Caenorhabditis elegans Hypothetical
           protein F47B3.2 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 389 GYSAELIVINVALEAISDNSNCQQMKRYIQDTRHQ 285
           G S  ++ I++ ++ +    NC+ MK+ +++ R+Q
Sbjct: 26  GRSGTIVGISLIMDKMIQGINCKDMKKLVEEIRNQ 60


>U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical
           protein F47B3.7 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 389 GYSAELIVINVALEAISDNSNCQQMKRYIQDTRHQ 285
           G S  ++ I++ ++ +    NC+ MK+ +++ R+Q
Sbjct: 270 GRSGTIVGISLIMDKMIQGINCKDMKKLVEEIRNQ 304


>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 399 VEPLLLVLNLGTHGFYPFPGTFRRQYNMYVEYTSII 506
           V P+ +V  L   G+ PFP T  R+Y  + E  +I+
Sbjct: 83  VHPITVVRELIQFGYEPFPTTCGRKYIFFGEEMAIL 118


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 386  TLGGCGAFTPGSKPRNPRLLPIPGDI*ASVQYVC*VHIDYRRAQMLSRYSP 538
            T+ G G F P  +P  P L  I   +   + Y   + +DY R Q+L +Y P
Sbjct: 1607 TVKGAGHFVPQDRP-GPALQMIYNFV-NQLDYNRNLTLDYSRKQLLPQYQP 1655


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,114,810
Number of Sequences: 27780
Number of extensions: 314087
Number of successful extensions: 786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)