Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c08f
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    24   1.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    24   1.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.3  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 368 VINVALEAISDNSNCQQMKRYIQDTRHQMQISDDE 264
           +I   +   +D   C   ++YI     +M+  DDE
Sbjct: 95  IIEQCVSKAADEDECMVARKYIDCALEKMKFLDDE 129


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 368 VINVALEAISDNSNCQQMKRYIQDTRHQMQISDDE 264
           +I   +   +D   C   ++YI     +M+  DDE
Sbjct: 95  IIEQCVSKAADEDECMVARKYIDCALEKMKFLDDE 129


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 335 NSNCQQMKRYIQDTRHQMQISDDE 264
           NSN  Q+K++++DT +++  + DE
Sbjct: 168 NSNIFQLKQHMRDTMNKIAETLDE 191


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 259 IVRNLIPQHMLVTC-RTIVRTFPIERTARNSPHTPTIIVLLLIVY 128
           I+RN++P++++  C +    T+  +  A  +    T I    +VY
Sbjct: 190 IIRNMVPENLVQACFQQAQTTYVTKEVATGTASEITQIQEATLVY 234


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 129 YTINNKTIIVGVCGELRAVLSIGNVLTMV 215
           YT+    +I  V G +     IGN+L  V
Sbjct: 36  YTVTQAILIALVLGSIIVGTVIGNILVCV 64


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 442 STHSRGHLGVSTICMLSTHRLSQSPD 519
           +T  R  LG++T+  LST  L    D
Sbjct: 272 ATSDRVGLGITTVLTLSTISLDSRTD 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,517
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)