Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c07r
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    27   0.22 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.50 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   6.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.1  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 135 KKPLNLKGNFKYNSQ*LLLPGTY 203
           KK  N++ NF+Y++  L LPG Y
Sbjct: 56  KKIYNIQNNFEYDTASLPLPGLY 78


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 667 DDLKKITQSAYA--QIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEK 533
           DD + ++ + Y   + +H  +      +   +PQP E V  KP S K
Sbjct: 362 DDFRGVSGTKYPILKAIHQTLGGSSNEIVEPVPQPVEEVTQKPSSTK 408


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 632 RISALCYLF*VILSPC 679
           +ISA+C+L   IL  C
Sbjct: 43  KISAICFLLSTILGTC 58


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 126 TQTKKPLNLKGNFKYNSQ 179
           TQT+ PLNL  +F Y  +
Sbjct: 203 TQTQLPLNLGLDFPYQGK 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,360
Number of Sequences: 336
Number of extensions: 3783
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)