Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c07r
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 131 1e-31
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 73 4e-14
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 0.72
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 28 1.7
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 28 1.7
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 2.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.9
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 27 3.9
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.1
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 26 6.7
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 8.9
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 25 8.9
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 8.9
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 131 bits (316), Expect = 1e-31
Identities = 60/138 (43%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Frame = -3
Query: 757 QGPLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSF 584
+G + D+M M L GRVSEEIFFG +IT+GA DD +K+T+ A A + YGM+ VG +++
Sbjct: 605 RGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMSPTVGTIAY 664
Query: 583 EMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
P + KP+SE TA++ID E+R L+ +A++ T LL +HK +E +A+RLL++E+
Sbjct: 665 --PIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQKEV 722
Query: 403 LSRDDMIELLGPRPFPEK 350
++ +++ +LGPRP+ K
Sbjct: 723 ITYNEVETILGPRPYAYK 740
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 72.9 bits (171), Expect = 4e-14
Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Frame = -3
Query: 730 MTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMV 557
+T+GGR +EE+ +G+ IT+GA +D+ K TQ A + +GM+ ++G VS E EM
Sbjct: 584 VTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSLE----AEM- 638
Query: 556 IDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDM 386
S T L++SE++ L+ +++ + LL HK ++ +A L+ E L+ ++M
Sbjct: 639 --DNLSPATRALVESEIKSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEEM 693
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 535 KTAELIDSEVRDL-INNAHKHTTDLLTKHKPNIEKVAERLL 416
+ AEL S+V L + N HK LLT PN+E+ LL
Sbjct: 756 RIAELSQSDVATLCLTNMHKILASLLTTDHPNLEESVMLLL 796
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -3
Query: 643 SAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDL 464
S+ + ++H + N + + + D+PY + ++ S+ RD++ H + L
Sbjct: 52 SSNSFVIHKCLPPLQRNNTIRKRKRNPFLADRPYCINSEDMPLSDDRDMLKERHVKSRKL 111
Query: 463 LTKHKPN 443
L K K N
Sbjct: 112 LLKEKGN 118
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 27.9 bits (59), Expect = 1.7
Identities = 28/125 (22%), Positives = 55/125 (44%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQP 569
L + + L G V+E R+ ++L + + Y VH G K GN
Sbjct: 39 LVSKRFLGLDGLVNE---LSRLFEQVNNELMLLVKDNYQDFVHLGSRMKSGNTKV----- 90
Query: 568 GEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDD 389
+I + ++ E + + + LI ++ + +L KHK ++E E+L+ +L D
Sbjct: 91 -STLISSIH--RSEEQLKNSKQSLIGHSTEIQNNL--KHKQDVEN--EKLIASNLLLLDQ 143
Query: 388 MIELL 374
+++ L
Sbjct: 144 ILKFL 148
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 295 ASCLHLMILCLQRTLHKY 348
ASCL LMILCL LH +
Sbjct: 379 ASCLALMILCLYYDLHMH 396
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -3
Query: 547 PYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIELLG 371
P SE ++L D+ VR+ I +HK + H+P I+ + + + D+ +E++G
Sbjct: 1599 PVSEWVSKL-DTHVRNCIKFSHKQNLEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIG 1656
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -3
Query: 466 LLTKHK---PNIEKVAERLLKQEILSRDDMIELLGPRPFPEK-STYEE 335
+L HK P E + RLLK E L +D +++ PRP + ST +E
Sbjct: 1054 VLVSHKISHPAYELLVSRLLKGEPLPKDVVVKEFKPRPSTKPFSTQDE 1101
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -3
Query: 604 KVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAE 425
K +S+E Q V DK S ++ ++DL + + T +L +P E+V
Sbjct: 150 KTYKISYEQTQTLHAVFDKSLSHNNFQINSKILKDLTEHFGQRTEELTI--QPLQERVLL 207
Query: 424 RLLKQEILSRDDMIE 380
+E++ D+++
Sbjct: 208 TSFTEEVVHNRDILK 222
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 551 VNHHFTGLWHLERHISDFSVHTIVYNLR 634
V HH + LW+L+ +SD V +++Y+L+
Sbjct: 147 VAHHSSVLWYLQSELSD--VSSVLYHLQ 172
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 553 DKPYSEKTAELIDSEVRDLINNAHKHT 473
D + EL +EVR++ N+ HKHT
Sbjct: 1075 DVAQEDNFIELSSNEVRNVSNDEHKHT 1101
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 667 DDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKP-YSEKTAELIDSEVRDLIN 491
D L+ S + V G NA V +V PG M P +S++ AE+ S + ++
Sbjct: 126 DTLQSKISSIHMPHVQQGDNAVVSSVGGPETDPGNMETTDPLFSDELAEIYLS-IHKCMD 184
Query: 490 NAHKH 476
HK+
Sbjct: 185 MRHKY 189
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 526 LRSFQSMVCQSPFHRAVASRKTHFRL*RSYHSVQSAHKRFVLSFL 660
+ S Q +VC++PF AV ++ +L Y S +F+L+++
Sbjct: 209 IASLQKLVCRNPFILAVKDKEASGKL-TQYVVKCSEQDKFLLAYI 252
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 8.9
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Frame = -3
Query: 745 FDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVH----YGMNAKVGNVSFEM 578
F ++ + + FG ITT +Q D +K+ ++ I + G + K NV +
Sbjct: 38 FSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAI 97
Query: 577 PQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERL-LKQEIL 401
Q + + EK E + + + ++ + TD + P +A +L +
Sbjct: 98 EQQSPDIAQGLHYEKALEELGAGDQGIM---FGYATDETPEKLPLTILLAHKLNAAMSVA 154
Query: 400 SRDDMIELLGPRPFPEKSTYEEFVEGTGSL 311
RD + L RP + E+ E G++
Sbjct: 155 RRDGSLPWL--RPDTKTQVTIEYEEENGAV 182
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 75 QYFDLSTTTKICYENSNTQTKKPLNLKGNFKYNSQ*LLLPGTYF 206
Q+F L+ TT I N N + P N+ +F ++S +L Y+
Sbjct: 175 QFFPLTITTLIVKNNKNVVSNLPKNV--SFYFHSDNTVLLNEYY 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,442
Number of Sequences: 5004
Number of extensions: 61992
Number of successful extensions: 220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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