Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c07r
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 153 2e-37
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 147 7e-36
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 85 4e-17
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721... 75 6e-14
01_05_0430 + 22078651-22078677,22079269-22079356,22079669-220799... 75 8e-14
06_03_1068 - 27341103-27341444,27341689-27341929,27342030-273423... 67 1e-11
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 67 2e-11
06_01_0876 - 6712224-6712812,6713777-6715233 59 3e-09
02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772... 58 6e-09
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703... 50 2e-06
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 31 0.76
09_04_0461 + 17781413-17781474,17781576-17781629,17781729-177818... 30 1.7
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 29 3.1
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053... 29 5.3
03_06_0598 + 34977063-34977220,34977957-34978101,34978362-349784... 29 5.3
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 28 9.3
>05_05_0098 + 22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 153 bits (370), Expect = 2e-37
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 2/159 (1%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQP 569
LFD CMTLGGR +EE+ GRI+TGAQ+DL+K+T+ YAQ+ YG + KVG +SF
Sbjct: 664 LFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQRDD 723
Query: 568 GEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDD 389
G + KPYS +TA +ID EVR+ + A+K T +L+T+HK + K+AE LL++E+L +DD
Sbjct: 724 G-FEMTKPYSNQTASIIDDEVREWVGKAYKKTVELITEHKEQVAKIAEMLLEKEVLHQDD 782
Query: 388 MIELLGPRPF--PEKSTYEEFVEGTGSLDEDTTLPEGLK 278
++ +LG RPF E + Y+ F +G +ED+ E K
Sbjct: 783 LVRVLGERPFKASEPTNYDLFKQGFQD-EEDSKNQEAAK 820
>01_06_1310 - 36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 147 bits (357), Expect = 7e-36
Identities = 69/152 (45%), Positives = 107/152 (70%), Gaps = 2/152 (1%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQP 569
LFD CMTLGGR +EE+ G+I+TGAQ+DL+K+T+ YAQ+ YG + KVG +SF +
Sbjct: 633 LFDMTCMTLGGRAAEEVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQRED 692
Query: 568 GEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDD 389
G + KPYS +TA +ID+EVR+ + A++ T +L+ +HK + ++AE LL++E+L +DD
Sbjct: 693 G-FEMSKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAELLLEKEVLHQDD 751
Query: 388 MIELLGPRPFP--EKSTYEEFVEGTGSLDEDT 299
++++LG RPF E + Y+ F + G DED+
Sbjct: 752 LVQVLGERPFKTLEPTNYDRFKQ--GFQDEDS 781
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 85.4 bits (202), Expect = 4e-17
Identities = 42/131 (32%), Positives = 79/131 (60%), Gaps = 7/131 (5%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMP 575
L ++M + LGGRV+EE+ FG+ +TTGA +D ++++ A + +G + K+G V+ P
Sbjct: 545 LENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGP 604
Query: 574 QPG-----EMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQ 410
+M K YS TA+++D+EVR+L+ A+ T ++T H + K+A+ L+++
Sbjct: 605 GGNPFLGQQMSSQKDYSMATADVVDAEVRELVEKAYSRATQIITTHIDILHKLAQLLMEK 664
Query: 409 EILSRDDMIEL 377
E + ++ + L
Sbjct: 665 ETVDGEEFMSL 675
>01_05_0429 +
22070636-22070662,22071490-22071577,22071908-22072168,
22072925-22073161,22073251-22073375,22074093-22074569,
22074655-22075569
Length = 709
Score = 74.9 bits (176), Expect = 6e-14
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Frame = -3
Query: 730 MTLGGRVSEEIFFG--RITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMV 557
+++ GRV+EE+ FG +T+GA D + T+ A A + YGM+ ++G VS+ G
Sbjct: 536 VSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSYNYEDDG--- 592
Query: 556 IDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIEL 377
K S +T LI+ EV+ L+ NA+ + +LTKH +A+ LL+ E L+ + ++
Sbjct: 593 --KSMSTETRLLIEQEVKSLLENAYNNAKTILTKHSKEHHVLAQALLEHETLTGAQIKKI 650
Query: 376 L 374
L
Sbjct: 651 L 651
>01_05_0430 +
22078651-22078677,22079269-22079356,22079669-22079929,
22080693-22080950,22081036-22081160,22082375-22082851,
22082937-22083848
Length = 715
Score = 74.5 bits (175), Expect = 8e-14
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Frame = -3
Query: 739 RMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPG 566
R+ + +GGRV+EE+ FG +T+GA D ++ T A A + YGM+ ++G VS+ G
Sbjct: 540 RLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFVSYNYEDDG 599
Query: 565 EMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILS 398
K S +T LI+ EV+ + NA+ + ++L KH + +A LL+ E L+
Sbjct: 600 -----KSMSTETRLLIEKEVKCFVENAYNNAKNILIKHNKELHALANALLEHETLT 650
>06_03_1068 -
27341103-27341444,27341689-27341929,27342030-27342343,
27342672-27343805
Length = 676
Score = 67.3 bits (157), Expect = 1e-11
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSF--E 581
LF R+ LGGR +EEI FG +TTGA DL++IT A +V +GM + +G S
Sbjct: 523 LFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGM-SDIGPWSLMDS 581
Query: 580 MPQPGE----MVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLK 413
Q G+ M+ SEK AE ID+ V+ L + A++ + ++ ++K+ E LL+
Sbjct: 582 GAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLE 641
Query: 412 QEILSRDDMIELL 374
+E LS D+ +L
Sbjct: 642 KETLSGDEFRAIL 654
>01_05_0724 - 24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 66.9 bits (156), Expect = 2e-11
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMP 575
L R+ + +GGRV+EE+ FG +TTGA++DL T+ A + + GM+ +G V
Sbjct: 649 LLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMSDAIGPVH---- 704
Query: 574 QPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSR 395
V ++P E + ID+EV L+ A+ LL KH+ + +A LL++E L+
Sbjct: 705 -----VKERPSVEMQSR-IDAEVVKLLREAYGRVKRLLKKHEKQLHALANALLERETLTA 758
Query: 394 DDMIELLGP-RPFPEKSTYEE 335
D++ +++ P + P+ S EE
Sbjct: 759 DEINKVVHPYQEEPQLSFQEE 779
>06_01_0876 - 6712224-6712812,6713777-6715233
Length = 681
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/125 (29%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Frame = -3
Query: 724 LGGRVSEEIFFGR--ITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMP--QPGEMV 557
LGGR +EE+ FG +TTGA DL+++T+ A + +GM +++G + P Q G++V
Sbjct: 535 LGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGM-SEIGPWALAEPAAQGGDVV 593
Query: 556 I----DKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDD 389
+ SE+ A ID+ VR +++ A++ + +++ I+++ + L+++E L D+
Sbjct: 594 LRMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDE 653
Query: 388 MIELL 374
+L
Sbjct: 654 FRAIL 658
>02_05_0136 + 26174965-26175849,26176965-26177030,26177124-26177258,
26177369-26177434,26177516-26177701,26177777-26177863,
26177985-26178098,26178174-26178298,26178375-26178483,
26179298-26179423,26179511-26179831,26180146-26180269,
26180405-26180529
Length = 822
Score = 58.4 bits (135), Expect = 6e-09
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Frame = -3
Query: 739 RMCMTLGGRVSEEIFF-GRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGE 563
R+ LGGR +EE+ GR++TGA DD+++ T AY + YG+N ++G +S G
Sbjct: 668 RLVTLLGGRAAEEVVLSGRVSTGALDDIRRATDMAYKAVAEYGLNQRIGPISVATLSNGG 727
Query: 562 MVID--KPYSEKTAELID---SEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILS 398
+ P+ L+D EV+ L+ +A ++ + +E + L + E +
Sbjct: 728 LDESGGSPWGRDQGHLVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAYLEENEKVE 787
Query: 397 RDDMIELLGPRPFPEKSTYEEFVEG 323
+++ E L P++ T F+ G
Sbjct: 788 GEELQEWLKSVVAPKELT--SFIRG 810
>01_05_0540 +
23069954-23070103,23070170-23070251,23070298-23070355,
23071276-23071318,23072262-23073341,23073448-23073509,
23073759-23073855,23074703-23074984,23075073-23075147,
23075223-23075276,23075373-23075515,23076567-23076858
Length = 805
Score = 50.0 bits (114), Expect = 2e-06
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Frame = -3
Query: 739 RMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPG 566
R+ + GG V+EE+ FG +T GA++DL T AQ K+ + + +
Sbjct: 580 RIDVCFGGAVAEELLFGEHTVTAGAKNDL--FTAKELAQ--------KLTSDTVD----- 624
Query: 565 EMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDM 386
M ++K S + I++EV L+ + + LL KH+ ++ VA LL++EIL+ D++
Sbjct: 625 RMHLEKWPSVQMQATINAEVLKLLGESRERVKRLLKKHEMQLQAVANALLEKEILNADEI 684
Query: 385 IELLGPRPFPEKSTYEE 335
I+++ P + T+++
Sbjct: 685 IKVVQPYKREPQITFQD 701
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -3
Query: 592 VSFEMPQPGEMVIDKPYSEKTAELID--SEVRDLINNAHKHTT---DLLTKHKPNIEK 434
+ + + GE I YS A L D SEV + INN HKHT DL + +EK
Sbjct: 455 IDLDQLENGEYRISPRYSSDLAVLKDELSEVENHINNLHKHTAADLDLTIDKQLKLEK 512
>09_04_0461 +
17781413-17781474,17781576-17781629,17781729-17781839,
17781921-17781991,17782256-17782449,17783019-17783096
Length = 189
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = -3
Query: 730 MTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVHYG-MNAKV-GNVSFEMPQPGEMV 557
M LGG V + F A+D++ K ++A + H + K+ NV+ +P+ G +
Sbjct: 79 MVLGGVVYTAVPFYNRARKAEDEVTKNVETALEVVEHAAEVTEKLAANVANALPENGTLH 138
Query: 556 IDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQ 410
E AE++D + + + K D+ + +E V E L K+
Sbjct: 139 KLAEEVEYIAEIVDKDAQK-VEIIIKKIEDVSNRIDAAVEPVIEELEKE 186
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 601 VGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINN 488
VGNV E PQ G +DKP E + +++ + N
Sbjct: 284 VGNVEKENPQVGNAPVDKPTQEVPQNQLPTQIPQSVQN 321
>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
28205889-28205946,28206554-28206603,28207805-28207873,
28208183-28208317,28208410-28208581,28208663-28208754,
28208837-28209244,28209783-28210704,28211592-28211831,
28211898-28212229,28212460-28212608,28213265-28213841,
28214078-28214224,28214693-28214968,28215296-28215403,
28215634-28215839,28216079-28216217,28216329-28216982,
28218040-28218099,28218234-28218388,28218414-28218636,
28218729-28218773
Length = 1834
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 590 HISDFSVHTIVYNLRISALCYLF*VILSPCGYS 688
++SD + R++ LCYL +IL CG+S
Sbjct: 1686 YLSDIIIQKAEIENRLACLCYLSDIILLNCGWS 1718
>03_06_0598 +
34977063-34977220,34977957-34978101,34978362-34978481,
34978640-34978774,34979138-34979213,34979398-34979450,
34979594-34979695,34979848-34979964,34980170-34980228,
34980810-34980984,34981628-34981762,34981855-34981953,
34982143-34982251,34982981-34983093,34983206-34983265,
34983821-34983835
Length = 556
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 577 PQPGEMVIDK-PYSE-KTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
P+ GE ++ + P++E K A ++ V +L+ TT + P+I ++ R +
Sbjct: 457 PKVGERLLCRHPFNESKRAYVVPQHVEELLKCYWPGTTSEPREELPSINEIRSRCMGYLD 516
Query: 403 LSRDDMIELLGPRPF 359
R D + L P P+
Sbjct: 517 RMRPDHMRRLNPTPY 531
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 279 RIGIRRNSPQHHRRKPAHQAP 217
R GIR P+HHR++P H AP
Sbjct: 60 RPGIRHPVPRHHRKRP-HVAP 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,923,887
Number of Sequences: 37544
Number of extensions: 365046
Number of successful extensions: 1058
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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