Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c07r
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 241 4e-64
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 124 7e-29
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 124 7e-29
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 78 8e-15
AC084159-1|AAK39368.1| 223|Caenorhabditis elegans Hypothetical ... 62 3e-10
AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical ... 30 2.1
U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated p... 29 4.8
AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein. 29 4.8
AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81030-8|CAB02716.1| 421|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80815-10|AAO91678.1| 437|Caenorhabditis elegans Hypothetical p... 28 6.3
U80815-9|AAV34785.1| 361|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80815-8|AAB37997.1| 498|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80815-7|AAO91677.1| 473|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80815-6|AAO91675.1| 464|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80815-5|AAO91676.1| 439|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical pr... 28 6.3
U42848-5|AAN84855.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.3
U42848-4|AAA83610.2| 302|Caenorhabditis elegans Hypothetical pr... 28 6.3
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 28 8.3
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 28 8.3
AC006804-2|AAL32253.2| 372|Caenorhabditis elegans Hypothetical ... 28 8.3
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (spastic
paraplegia)protein 7 protein.
Length = 782
Score = 241 bits (590), Expect = 4e-64
Identities = 111/164 (67%), Positives = 137/164 (83%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQP 569
L DRMCMTLGGRV+EEIFFGRITTGAQDDL+K+TQ AY+Q+V +GM+ KVG +SFE P P
Sbjct: 606 LLDRMCMTLGGRVAEEIFFGRITTGAQDDLQKVTQMAYSQVVKFGMSEKVGPLSFETPAP 665
Query: 568 GEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDD 389
GEM DKPYSE TA+LID EVRDL+ NA + T DLL + + +IE+VA RLL++EIL+R+D
Sbjct: 666 GEMAFDKPYSEATAQLIDQEVRDLVMNALRRTRDLLLEKRSDIERVALRLLEKEILNRED 725
Query: 388 MIELLGPRPFPEKSTYEEFVEGTGSLDEDTTLPEGLKDWNKEKQ 257
MIEL+G RPF EK+TYEE V GTG LDE+ LP+GL++WNKE +
Sbjct: 726 MIELVGKRPFVEKNTYEEMVSGTGGLDENVELPKGLENWNKESE 769
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 124 bits (299), Expect = 7e-29
Identities = 61/133 (45%), Positives = 92/133 (69%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQP 569
LFDRMCM LGGR +E + FGR T+GAQDDL+K+T+SAYAQ+ YGM++ VG +SF +
Sbjct: 603 LFDRMCMMLGGRCAENLKFGRATSGAQDDLQKVTKSAYAQVKLYGMSSIVGPLSFPNTEG 662
Query: 568 GEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDD 389
++ KPYS+K A D E ++ A++ TTDL+ + +E +A+ LLK+E+L+ +D
Sbjct: 663 FQI---KPYSKKFASTFDQEATLIVAKANEATTDLIKNNMDKLETIAQALLKREVLNYED 719
Query: 388 MIELLGPRPFPEK 350
+ +L+G F +K
Sbjct: 720 VKKLIGTPKFGDK 732
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 124 bits (299), Expect = 7e-29
Identities = 61/133 (45%), Positives = 92/133 (69%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQP 569
LFDRMCM LGGR +E + FGR T+GAQDDL+K+T+SAYAQ+ YGM++ VG +SF +
Sbjct: 603 LFDRMCMMLGGRCAENLKFGRATSGAQDDLQKVTKSAYAQVKLYGMSSIVGPLSFPNTEG 662
Query: 568 GEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDD 389
++ KPYS+K A D E ++ A++ TTDL+ + +E +A+ LLK+E+L+ +D
Sbjct: 663 FQI---KPYSKKFASTFDQEATLIVAKANEATTDLIKNNMDKLETIAQALLKREVLNYED 719
Query: 388 MIELLGPRPFPEK 350
+ +L+G F +K
Sbjct: 720 VKKLIGTPKFGDK 732
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 77.8 bits (183), Expect = 8e-15
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Frame = -3
Query: 724 LGGRVSEEIFFG--RITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMVID 551
+GGRV+EE+ FG ++TTGA DDL K TQ A + +GM+ KVG F Q E +
Sbjct: 518 MGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGLRDFTA-QDNESALV 576
Query: 550 K--PYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDM 386
K + +TAELID+E+ ++ ++K +L K + +AE LL+ E LS D++
Sbjct: 577 KVSDLAPQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADEV 633
>AC084159-1|AAK39368.1| 223|Caenorhabditis elegans Hypothetical
protein Y73B3A.21 protein.
Length = 223
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/37 (72%), Positives = 33/37 (89%)
Frame = -3
Query: 748 LFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSA 638
LFDRMCM LGGR +E + FGRIT+GAQDDL+K+T+SA
Sbjct: 108 LFDRMCMMLGGRCAENLKFGRITSGAQDDLQKVTKSA 144
>AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical
protein T05E7.5 protein.
Length = 381
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -3
Query: 529 AELIDSEVRDL---INNAHKHTTDLLTKHKPNIEKVAERLLKQE 407
A+ DSE+ L INN K DL +H+ ++EK+ ERL +++
Sbjct: 117 AKCHDSELNRLYTIINNLEKKVEDLNGEHQKSLEKLKERLHEKD 160
>U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated
protein 97 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 66 SKFQYFDLSTTTKICYENSNTQTKKPL--NLKGNFKYNSQ*LLLPG 197
+KF FD+ T K CY+ T+ KK + +LK N + + PG
Sbjct: 301 TKFYEFDMKPTCKRCYDRFPTELKKRISESLKDRDVENQRRSMSPG 346
>AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 66 SKFQYFDLSTTTKICYENSNTQTKKPL--NLKGNFKYNSQ*LLLPG 197
+KF FD+ T K CY+ T+ KK + +LK N + + PG
Sbjct: 301 TKFYEFDMKPTCKRCYDRFPTELKKRISESLKDRDVENQRRSMSPG 346
>AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical
protein Y41D4A.4 protein.
Length = 580
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 25 YTEMQGSILCNSHIQSSSILI-FRLQLKYVTKTVTRKQKSL*I-LKVILNIIHNNYYYRV 198
Y E G L ++ S + I FR K KTV ++K K +L I N+YYY++
Sbjct: 65 YHETMGESLLGVELEFSGLDIKFRTNTK---KTVVCEKKLTETDYKTLLYAIQNSYYYQM 121
Query: 199 LIFYW-LWGLMG 231
+ +WG++G
Sbjct: 122 YLDDMPIWGMVG 133
>Z81030-8|CAB02716.1| 421|Caenorhabditis elegans Hypothetical
protein C01G10.10 protein.
Length = 421
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 348 LFSGNGLGPNSSIISSRLKISCFSNLSATFSMLGLCFVNKSVVCLCALLIRSLTSESM 521
L G G+ N I + K+S N++ +L LC N ++ LL+ SE++
Sbjct: 300 LVIGGGVAANQYIFGAISKLSAAHNVTTIKVLLSLCTDNAEMIAYSGLLMLVNRSEAI 357
>U80815-10|AAO91678.1| 437|Caenorhabditis elegans Hypothetical
protein W02C12.3g protein.
Length = 437
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 308 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 352
>U80815-9|AAV34785.1| 361|Caenorhabditis elegans Hypothetical
protein W02C12.3h protein.
Length = 361
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 171 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 215
>U80815-8|AAB37997.1| 498|Caenorhabditis elegans Hypothetical
protein W02C12.3a protein.
Length = 498
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 308 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 352
>U80815-7|AAO91677.1| 473|Caenorhabditis elegans Hypothetical
protein W02C12.3f protein.
Length = 473
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 283 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 327
>U80815-6|AAO91675.1| 464|Caenorhabditis elegans Hypothetical
protein W02C12.3d protein.
Length = 464
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 274 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 318
>U80815-5|AAO91676.1| 439|Caenorhabditis elegans Hypothetical
protein W02C12.3e protein.
Length = 439
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 249 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 293
>U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical
protein W02C12.3c protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 334 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 378
>U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical
protein W02C12.3b protein.
Length = 499
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 538 EKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 404
E TA V++L + + H P I KV ER +KQEI
Sbjct: 309 ESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEI 353
>U42848-5|AAN84855.1| 283|Caenorhabditis elegans Hypothetical
protein C31H1.6b protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = -3
Query: 658 KKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHK 479
++ T+S+ I+ G+ + VS ++ P E+V + + T E++ + + + N + +
Sbjct: 112 ERCTRSSSTVIIEKGV-CRGAEVSLKLKTPCEVV--EANAGFTTEVMLNHIGE--NTSEE 166
Query: 478 HTT---DLLTKHKPNIEKVAERLLKQEILSRDDMIE 380
T D K P E VAE ++ ++I++RD IE
Sbjct: 167 ELTWGVDSCVKVPPGAETVAELVIIEDIVTRDFRIE 202
>U42848-4|AAA83610.2| 302|Caenorhabditis elegans Hypothetical
protein C31H1.6a protein.
Length = 302
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = -3
Query: 658 KKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHK 479
++ T+S+ I+ G+ + VS ++ P E+V + + T E++ + + + N + +
Sbjct: 131 ERCTRSSSTVIIEKGV-CRGAEVSLKLKTPCEVV--EANAGFTTEVMLNHIGE--NTSEE 185
Query: 478 HTT---DLLTKHKPNIEKVAERLLKQEILSRDDMIE 380
T D K P E VAE ++ ++I++RD IE
Sbjct: 186 ELTWGVDSCVKVPPGAETVAELVIIEDIVTRDFRIE 221
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/101 (23%), Positives = 41/101 (40%)
Frame = -3
Query: 697 FFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELI 518
FFGR Q+ +K + Y ++ G V F+ + D+P KTA LI
Sbjct: 368 FFGRELMNTQESIK-MRLKKYDKLSELKKKFANGFVQFQQKL---LKTDEPKHNKTASLI 423
Query: 517 DSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSR 395
+ E D +++ +++ + + L QE L R
Sbjct: 424 EQESIDSSKLLDPAMYNVVVDVLSSVQSIRQDLTSQEHLKR 464
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/101 (23%), Positives = 41/101 (40%)
Frame = -3
Query: 697 FFGRITTGAQDDLKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELI 518
FFGR Q+ +K + Y ++ G V F+ + D+P KTA LI
Sbjct: 352 FFGRELMNTQESIK-MRLKKYDKLSELKKKFANGFVQFQQKL---LKTDEPKHNKTASLI 407
Query: 517 DSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSR 395
+ E D +++ +++ + + L QE L R
Sbjct: 408 EQESIDSSKLLDPAMYNVVVDVLSSVQSIRQDLTSQEHLKR 448
>AC006804-2|AAL32253.2| 372|Caenorhabditis elegans Hypothetical
protein Y53G8B.3 protein.
Length = 372
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 661 LKKITQSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSE--KTAELIDSEVRDLINN 488
L + A+AQ++ YG N+K+ N +++ Q + ++ + E K + + + R
Sbjct: 299 LAPVVLVAFAQLLRYGFNSKISN-AWKPTQKFKPTFNQDFLEFRKQEKALQGKTRRKEQK 357
Query: 487 AHKHTTDLLTKHKPN 443
+ DL+ K K N
Sbjct: 358 KNIQWRDLMLKTKKN 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,492
Number of Sequences: 27780
Number of extensions: 343653
Number of successful extensions: 1126
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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