Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c07f
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    42   7e-05
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   1.6  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   3.6  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   6.3  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   8.4  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 19/51 (37%), Positives = 32/51 (62%)
 Frame = +2

Query: 443 MFGAIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKWVR 595
           + G I +  +L +V       +EI+W+DF   +L+KG+VE+L V+N+  VR
Sbjct: 136 ILGGILVAYILYNVLSPNANMQEITWQDFRQQFLDKGLVERLVVVNRNMVR 186


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 246 RVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHHQINGT 356
           RV+ +K LK    M  LH+  P+ H NR L  Q+  T
Sbjct: 467 RVSYQKLLKSHV-MNKLHMAHPKSHTNRSLLRQLKNT 502


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 234 NTSNRVAV--RKTLKLRKKMQVLHLKVPRLHRNRPLHHQING 353
           N++NRV +  +K  +L       H K+ + HRNR  H+  NG
Sbjct: 289 NSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNG 330


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 422 QDKEKWMMFGAIGIVTLLASVAYFELRYREISW 520
           QDK +W++     I+T+L     F+++   + W
Sbjct: 102 QDKSRWVLLIIWSIITILTIDKKFKIKESYLEW 134


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 173 LDSVLRQWYEFCKKPPKGFEKYFQ 244
           LD VL+ W E    P    EK+FQ
Sbjct: 114 LDQVLKVWLESKTNPCLDMEKFFQ 137


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 98  LRLTHSQLSKIHFNGHKLQPVGVPALDSVLRQWYEFCKKP 217
           LR   ++   +H++   ++P   P +  V  QW E   +P
Sbjct: 108 LRFEDTKFYFVHYSNSPIEPFAKPNISYVNPQWNELDYRP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,471
Number of Sequences: 5004
Number of extensions: 36301
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)