Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c07f
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258...    29   2.8  
01_01_0739 - 5749703-5750035                                           28   4.9  
08_02_0985 + 23299996-23300208,23300355-23300520,23300790-233010...    27   8.6  
01_01_1006 - 7972645-7973811                                           27   8.6  

>11_06_0031 +
           19425011-19425113,19425552-19425637,19425732-19425829,
           19425950-19426067,19426200-19426289,19426770-19427074,
           19427162-19427357,19427435-19427617,19427713-19427982,
           19428906-19429151,19429633-19429704,19430087-19430104
          Length = 594

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 156 GCNLCPLKCIFDSCECVNL 100
           GC +C  KC FD+ E +NL
Sbjct: 57  GCGICVKKCPFDAIEIINL 75


>01_01_0739 - 5749703-5750035
          Length = 110

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 452 AIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKW 589
           A G   L A+VA   LRY +++W+D V  Y   G + K +   K+W
Sbjct: 23  AAGQAFLQAAVAD-ALRYTKMTWQDMVEEYRRAGKLHKYDP-GKEW 66


>08_02_0985 +
           23299996-23300208,23300355-23300520,23300790-23301043,
           23301128-23301340,23301414-23301506,23301609-23301710,
           23302852-23303229
          Length = 472

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 83  DMW-KGLRLTHSQLSKIHFNGHKLQPVGV--PALDSVLRQWYEFCKK 214
           D+W KG+R T   L K +FNG     +    P       QW E   K
Sbjct: 229 DVWQKGIRQTRYNLKKAYFNGVPANEIRTTSPISSMTDEQWLELVAK 275


>01_01_1006 - 7972645-7973811
          Length = 388

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 162 PTGCNLCPLKCIFDSCECVNLR 97
           P GC L P     D C CV LR
Sbjct: 245 PDGCELPPGTADLDKCRCVGLR 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,919,239
Number of Sequences: 37544
Number of extensions: 218968
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)