Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c07f
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)                      30   1.6  
SB_39073| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_21700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)                 29   2.9  
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)
          Length = 266

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +2

Query: 110 HSQLSKIHFNGHKLQPVGVPALDSVLRQWYEFCKKPPKGFEKYFQPGSGQKDAKTQEKN 286
           + QL   +  G  ++P  V  +  +L+ W + C       +K     +  K+ KT +KN
Sbjct: 159 NKQLEVEYAMGRDIKPETVGTIAEILQDWCQSCDSILNSIDKQIGRANTYKEKKTMQKN 217


>SB_39073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 192 CLKTESRAGTPTGCNLCPLKCIF 124
           C  +E + GTP  C  C LKC F
Sbjct: 86  CESSEKKYGTPVLCEQCKLKCAF 108


>SB_21700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 89  WKGLRLTHSQLSKIHFN-GHKLQPVGVPALDSVLRQWYEFCKKP 217
           WK  R+T +QL +I F  G +  P   P  +   ++ Y +C KP
Sbjct: 8   WKHGRITSTQLRQIRFKAGTRKNPQFEPGFEPGPQRRYPYCGKP 51


>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
          Length = 681

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 192 SGMNSVKSRLRVLKNTSNRVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHH 341
           SG++S+KS LRVL    NR+     L+   K+ VL L   R+ +   L H
Sbjct: 201 SGLSSLKS-LRVLMLGKNRIRKINNLEALTKLDVLDLHGNRISKIENLSH 249


>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 258 RKTLKLRKKMQVLHLKVPRLHRNRPLHH 341
           R+  +L  +   LH + PRLHR RP  H
Sbjct: 173 RRRTRLHTRRPRLHTRRPRLHRRRPRLH 200


>SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 475 CFSCVF*IKIQ--RDKLERFCQFVFKQRCGRETR 570
           C +C    + Q  RDK+ + CQ  F  RCGR  R
Sbjct: 94  CPNCAMVFRKQPLRDKISKTCQTQFCYRCGRHFR 127


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +3

Query: 198 MNSVKSRLRVLKNTSNRVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHHQI 347
           ++ ++S+LR+ ++  + + ++K+  +RK  QVL   + R  R     HQ+
Sbjct: 551 LHEIRSKLRIQESKVDELRIQKSESVRKLSQVLQSSLDRNTRFSFFLHQL 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,544,357
Number of Sequences: 59808
Number of extensions: 267512
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)