Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c07f
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    54   1e-07
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF040661-14|AAG24220.1|  216|Caenorhabditis elegans Hypothetical...    29   2.5  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    29   3.3  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    29   3.3  
AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical...    28   5.8  
AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    28   5.8  
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL110478-5|CAE17955.1|   76|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC025715-1|ABJ99062.1|  747|Caenorhabditis elegans Paraplegin aa...    27   7.7  
AB257343-1|BAE96353.1|  747|Caenorhabditis elegans paraplegin pr...    27   7.7  

>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
 Frame = +2

Query: 452 AIGIVTLLASVAYFELR-YREISWRDFVNLYLNKGVVEKLEVINKKWVR 595
           A+ +  LLA  A+ + + YREISW++F + +L  G+VE+LEV++K+WVR
Sbjct: 127 AVSVGILLALYAFMDYQSYREISWKEFYSDFLEAGLVERLEVVDKRWVR 175


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = +3

Query: 210 KSRLRVLKNTSNRVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHHQINGT*TCSRLLXXXX 389
           K + ++ K   N     +  +L+K+ ++   K+ RLHRNR +   +       +LL    
Sbjct: 752 KKKYQLRKGALNMEQKERMRELKKRRRMKKQKIDRLHRNRKIGQILREWRVVRKLLMVKR 811

Query: 390 XXXXXXXXMKAKIKR 434
                   M+ K+K+
Sbjct: 812 ARRTLKKKMRKKVKQ 826


>AF040661-14|AAG24220.1|  216|Caenorhabditis elegans Hypothetical
           protein W10G11.13 protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 249 PGWKYFSKPLGGFLQ---NSYHCLKTES 175
           PGWK+F++P GG+     N Y   K E+
Sbjct: 46  PGWKFFNRPSGGWCMKVINEYKGAKAEA 73


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 249 PGWKYFSKPLGGF---LQNSYHCLKTESRA 169
           PGW++F++P GG+   +   +H  K ++ A
Sbjct: 258 PGWRFFNRPSGGWCIRVFTGFHAAKADAEA 287


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 192 CLKTESRAGTPTGCNLCPLKCIFDSCECV 106
           C K E++ G P  C  C L   F   +CV
Sbjct: 29  CQKNEAKYGKPGTCQYCKLNAAFHDQKCV 57


>AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical
           protein Y25C1A.3 protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 249 PGWKYFSKPLGGF 211
           PGWK+F +P GG+
Sbjct: 552 PGWKFFDRPTGGW 564


>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 249 PGWKYFSKPLGGF 211
           PGWK+F++P GG+
Sbjct: 42  PGWKFFNRPSGGW 54


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 110 HSQLSKIHFNGHKLQPVGVPALDSVLRQWYEFCKKPPKGFEKYF 241
           H +   I   GHK+   G+  L  +   WY+  KKP K  +K F
Sbjct: 80  HKKNGIIRALGHKIYNYGITIL--IFIGWYKPPKKPAKSVKKLF 121


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 109  CQSEAFPHVDDKFILKFLIYLQCSYTILSKIL 14
            C   AF   +  F+L F +YL C  +  SK L
Sbjct: 2288 CAQNAFSPGEIMFLLAFFVYLSCFASFFSKSL 2319


>AL110478-5|CAE17955.1|   76|Caenorhabditis elegans Hypothetical
           protein Y26D4A.12 protein.
          Length = 76

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 144 CPLKCIFDSCECVN 103
           C LKCI + C+CVN
Sbjct: 45  CNLKCIVNMCQCVN 58


>AC025715-1|ABJ99062.1|  747|Caenorhabditis elegans Paraplegin aaa
           protease familyprotein 1 protein.
          Length = 747

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 431 EKWMMFG--AIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKK 586
           ++W+     A GI+ +L+      +   +ISW +F+N  L  G V ++ ++ +K
Sbjct: 109 KRWLAISLFAYGILFILSPKGAAAVTADKISWSEFINELLPTGQVYRIIILPEK 162


>AB257343-1|BAE96353.1|  747|Caenorhabditis elegans paraplegin
           protein.
          Length = 747

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 431 EKWMMFG--AIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKK 586
           ++W+     A GI+ +L+      +   +ISW +F+N  L  G V ++ ++ +K
Sbjct: 109 KRWLAISLFAYGILFILSPKGAAAVTADKISWSEFINELLPTGQVYRIIILPEK 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,049
Number of Sequences: 27780
Number of extensions: 211484
Number of successful extensions: 559
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)