Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c07f
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 129 YILMDISCSLSAYLL*IPF*DSGMNSVKSRLRVLKNTSNR 248
           YI MD++CS S+    +        +V   ++  K+ +NR
Sbjct: 262 YIAMDVTCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNR 301


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 176 DSVLRQWYEFCKKPPKGFEKYFQPGSGQKDAKTQE 280
           D +  +  ++   PP+ F+  +QP     +AK  E
Sbjct: 51  DYIFEEGDDYVTLPPEFFDSLWQPDPYFLNAKVSE 85


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 294 LHLKVPRLHRNRPLHHQING 353
           +H+K+P+L  NR    +I G
Sbjct: 282 VHIKLPKLAANRAKLEEIAG 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,508
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)